PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00014660001
Common NameGSBRNA2T00014660001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 350aa    MW: 39015.8 Da    PI: 4.9721
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00014660001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W +eEd++l  ++++ G g+W++ ++  g++R++k+c++rw +yl
  GSBRNA2T00014660001 15 KGPWVPEEDDKLTAYIEKNGYGNWRSLPKLAGLNRCGKSCRLRWMNYL 62
                         79********************************************97 PP
2Myb_DNA-binding55.81.1e-1768113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg ++ eE+  +v+++++lG++ W++Ia++++ gRt++++k++w++++
  GSBRNA2T00014660001  68 RGEFSDEEESTIVRLHALLGNK-WSKIASHLP-GRTDNEIKNYWNTHM 113
                          899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9131062IPR017930Myb domain
SuperFamilySSF466895.99E-3012109IPR009057Homeodomain-like
SMARTSM007174.0E-121464IPR001005SANT/Myb domain
PfamPF002493.7E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-231669IPR009057Homeodomain-like
CDDcd001673.96E-101762No hitNo description
PROSITE profilePS5129426.53463117IPR017930Myb domain
SMARTSM007171.0E-1667115IPR001005SANT/Myb domain
PfamPF002495.4E-1668112IPR001005SANT/Myb domain
CDDcd001678.62E-1370113No hitNo description
Gene3DG3DSA:1.10.10.605.2E-2770117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGRSPCCDQD KGVKKGPWVP EEDDKLTAYI EKNGYGNWRS LPKLAGLNRC GKSCRLRWMN  60
YLRPDIRRGE FSDEEESTIV RLHALLGNKW SKIASHLPGR TDNEIKNYWN THMRKKMLQM  120
GIDPITHEPR TNDLSPILDV SQILAAAIGN GQFGNSNLIN NNTALEDLLK LQLIHKMLQI  180
ITPKAIPNIT SFTTNSLNPK LDSVVNSFTT NSVNPKPEQA AIQLNANEPH DFINQSANED  240
FMMPPFENIW DGFEDNQLPG LVTVSQKNLN SGTGMMPGYY GDQLSEIPSN GSISVSPETS  300
GFNYPGTTQH LTGSDVLEDW EKFLDDETSD SCWKSFLDLT SPTSSPGPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-27151174105C-Myb DNA-Binding Domain
1msf_C5e-27151174105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00438DAPTransfer from AT4G17785Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00014660001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834920.0AC183492.1 Brassica oleracea Contig G, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013723431.10.0transcription factor MYB39-like
SwissprotQ8GWP00.0MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A078IU410.0A0A078IU41_BRANA; BnaAnng13560D protein
TrEMBLA0A3P6EUJ90.0A0A3P6EUJ9_BRAOL; Uncharacterized protein
STRINGBra040181.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122431730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.10.0myb domain protein 39
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]