PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00014964001
Common NameGSBRNA2T00014964001, LOC106401732
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 543aa    MW: 60069.6 Da    PI: 7.1406
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00014964001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08260280526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C+ Gd+C +aHg
  GSBRNA2T00014964001 260 PCPEFRK-GSCPKGDSCEYAHG 280
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.18E-1332158IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-1432179IPR020683Ankyrin repeat-containing domain
SMARTSM002488.6E-476106IPR002110Ankyrin repeat
PROSITE profilePS5029715.06176184IPR020683Ankyrin repeat-containing domain
PfamPF136377.9E-877129No hitNo description
CDDcd002049.51E-1378174No hitNo description
SMARTSM0024833111143IPR002110Ankyrin repeat
PROSITE profilePS500888.71111146IPR002110Ankyrin repeat
SMARTSM003566.3E-5255281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976255282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-6260281IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5260280IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.465290314IPR000571Zinc finger, CCCH-type
SMARTSM0035637290313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MCGSESNLCS SRTLTEAESM RQKSQEGVPA ATCLLELAAC DYLPSFRREI EENSSDINES  60
GFWYCRRVGS KKMGFQERTP LMVAAMYGSI DVLTYIISTG RSDVNSLSSD EKVTALHCAV  120
SACSVSIVQV IKILLDASAS PNSLDANGNK PVDLLVRASR FIPNQTRKAV EILLTGSSVS  180
LMEEQEEEEV KSVVSKYPAD ASLPDINEGV YGTDEFRMFS FKVKPCSRAY SHDWTECPFV  240
HPGENARRRD PRKYPYTCVP CPEFRKGSCP KGDSCEYAHG VFESWLHPGQ YRTRLCKDET  300
GCARRVCFFA HRRDELRPVN ASTGSAMVSP QSPMSSPMGD NGVPLSPRNV GLWQNTPPPL  360
QLNGSRLKSS LSARDMDMVM QLQSPSRHSQ MNHYPSSPVR QPPPQRFESS AAMAAAVMNA  420
RSSAFAKRSL SFKPAPVAAS NVSDWGSPNG KVEWGMQREE MNKMRRSVSF GINGNNNNNN  480
NVSRPVRDYS DEPDVSWVNS LVKDSAQEGA FGLNDAAVRD EFKLPLWAEQ MYIDHEKQQS  540
VA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.174660.0root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00014964001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534400.0AK353440.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-C17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013697758.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A078J0580.0A0A078J058_BRANA; BnaCnng27960D protein
TrEMBLA0A3P6BRN40.0A0A3P6BRN4_BRAOL; Uncharacterized protein
STRINGBo4g025470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]