PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00015016001
Common NameGSBRNA2T00015016001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 177aa    MW: 20449.9 Da    PI: 10.6036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00015016001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66.1e-051946330
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                  HLH  3 rahnerErrRRdriNsafeeLrellPka 30
                         +  n rE+ RR r+++ f++L +++ + 
  GSBRNA2T00015016001 19 EQRNLREKERRMRMKHLFFTLSSHVSPT 46
                         5679*******************99764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-101684IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.7631665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-61880IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00642271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MRRQRGRELG EGSSMSWKEQ RNLREKERRM RMKHLFFTLS SHVSPTHRLP VPQLIDHSAS  60
YMMQLKEKVN TLREKKKTLL GEVGNLPEGS SFILPKLSIC SRGSIIKMNL IMDLNMKRVM  120
LHELVSVFEE EGAQVMSANL QNLNDRINYT VTAQAIICRI GIDPSRIEER LRDIIF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12227LREKER
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00015016001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585235.11e-122PREDICTED: uncharacterized protein LOC106294198
RefseqXP_013651516.11e-122transcription factor bHLH168-like
RefseqXP_022558662.11e-122transcription factor bHLH168-like
SwissprotF4I4E14e-92BH167_ARATH; Transcription factor bHLH167
TrEMBLA0A078IUI41e-126A0A078IUI4_BRANA; BnaCnng28140D protein
STRINGBo5g012060.11e-122(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.12e-94bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]