PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00015283001

Common Name

GSBRNA2T00015283001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 357aa MW: 39680.5 Da PI: 6.5313

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00015283001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	115.8	2.6e-36	95	191	2	97
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 lfqrlw++eDei lL+G++d+ ++++g s d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k sgke+ f+++hdq++fe GSBRNA2T00015283001 95 LFQRLWTDEDEIELLRGFLDYvTTHRGGSNPPDTAPFYEMIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFGSGKEVLFKSPHDQSTFE 184 79*****************88889989999****************************************************** PP DUF573 91 lskkiWg 97 +s+kiW+ GSBRNA2T00015283001 185 ISRKIWN 191 ****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.6E-33	96	191	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MTSDHRVAVF SIDSPDHEGG ESDTDDDVAL PETNDDLNSP SNVTVALPSG SSAVPVSVIP 60 ADSSPKWHHR TTEIIHRRRQ QPPPPPPAID DSRRLFQRLW TDEDEIELLR GFLDYVTTHR 120 GGSNPPDTAP FYEMIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFGSGK EVLFKSPHDQ 180 STFEISRKIW NRTGKIIGFE MDFEVNGNSP SSNPSAAVEI ESENGVEKRG SRKRSRSRIG 240 KIEEDNNVNV NVNETASAGI GGLIEEIVRS CVSPLIKEVM NGTTSMMMAG SLGPVFTRSL 300 GYGLEGGGGG GNKAVRDERW RKQQILELEV YSRRLELVQE EIRATLHELK TMPSGV*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MTSDHRVAVF SIDSPDHEGG ESDTDDDVAL PETNDDLNSP SNVTVALPSG SSAVPVSVIP  60
ADSSPKWHHR TTEIIHRRRQ QPPPPPPAID DSRRLFQRLW TDEDEIELLR GFLDYVTTHR  120
GGSNPPDTAP FYEMIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFGSGK EVLFKSPHDQ  180
STFEISRKIW NRTGKIIGFE MDFEVNGNSP SSNPSAAVEI ESENGVEKRG SRKRSRSRIG  240
KIEEDNNVNV NVNETASAGI GGLIEEIVRS CVSPLIKEVM NGTTSMMMAG SLGPVFTRSL  300
GYGLEGGGGG GNKAVRDERW RKQQILELEV YSRRLELVQE EIRATLHELK TMPSGV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	237	KRSRSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00015283001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009124974.1	0.0	PREDICTED: probable transcription factor At3g04930 isoform X1
Refseq	XP_018512504.1	0.0	PREDICTED: probable transcription factor At3g04930 isoform X2
Swissprot	Q9CAV7	1e-150	STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBL	A0A078G3Q5	0.0	A0A078G3Q5_BRANA; BnaA01g33360D protein
STRING	Bo1g151840.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.1	1e-123	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]