PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00015324001

Common Name

GSBRNA2T00015324001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 175aa MW: 19969.7 Da PI: 7.5571

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00015324001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.7	1.7e-19	2	51	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k +e++ nr +tfskR++gi+KK +EL LC++e+a + fs+tgk ++++ GSBRNA2T00015324001 2 KEVEDYENRMTTFSKRKTGIFKKMNELVALCGVEAAFVAFSETGKSHTFA 51 5789*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00120	8.81E-22	1	53	No hit	No description
PROSITE profile	PS50066	19.61	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.2E-14	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.62E-18	1	63	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.1E-20	4	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-7	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-7	31	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MKEVEDYENR MTTFSKRKTG IFKKMNELVA LCGVEAAFVA FSETGKSHTF AHPCMEDAVG 60 RLKSPLIDES PRKDDTNTDI LVGAYKSQKN EDLKKLYADF AEELEMEKEK EKKLKKSKSD 120 KRFDKMWWNA EGLSVEERKQ LHQRFVELNV TLCGKVSQQF RKDGDGSDLA GHGH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00015324001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022550213.1	1e-127	agamous-like MADS-box protein AGL29
TrEMBL	A0A078G8V9	1e-126	A0A078G8V9_BRANA; BnaA01g33690D protein
STRING	Bra040149.1-P	1e-124	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	4e-37	AGAMOUS-like 57

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]