PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00015570001
Common NameGSBRNA2T00015570001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 226aa    MW: 25437.2 Da    PI: 10.0144
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00015570001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.94.8e-15126213196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k +++s+v+   +l lp +f+++  ++k ++  +tl de+g+++e  +    k+ +  l++GW +F+ +++L  gD +vF+l++ + f
  GSBRNA2T00015570001 126 FVKSMLQSHVSGGFWLGLPVHFCRSE-LQK-QDGVITLIDEEGEEFETVY--LAKRTG--LSGGWLGFAVSHNLVYGDALVFELVRPTVF 209
                          89*********************766.454.4458***************..555544..************************987777 PP

                          ..EEEE CS
                   B3  91 elvvkv 96 
                            +v +
  GSBRNA2T00015570001 210 --KVYI 213
                          ..5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-18120215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-22122216IPR015300DNA-binding pseudobarrel domain
CDDcd100172.68E-23124215No hitNo description
PROSITE profilePS5086311.928126217IPR003340B3 DNA binding domain
SMARTSM010195.8E-20126217IPR003340B3 DNA binding domain
PfamPF023624.7E-13126213IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVVAKQSPYE EFRLRRLEEN KKRMEALNLP NLCQTLRLTS VKTSPMKKSN LAREKQLVVV  60
RRSSRISNAS SSSPVYKEAS CCSTSASTQK GRDLSNRVYV SEEIREEAFS KAEKLQADLR  120
NRFPSFVKSM LQSHVSGGFW LGLPVHFCRS ELQKQDGVIT LIDEEGEEFE TVYLAKRTGL  180
SGGWLGFAVS HNLVYGDALV FELVRPTVFK VYITRVKSSG ESLKM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00015570001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746911.11e-142B3 domain-containing protein At5g42700
SwissprotQ9FMZ44e-96Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A078G7621e-164A0A078G762_BRANA; BnaC02g28670D protein
STRINGBra035324.1-P1e-163(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-95B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]