PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00015701001
Common NameGSBRNA2T00015701001, LOC106451233, LOC106451235
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 261aa    MW: 29368 Da    PI: 5.2086
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00015701001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.5e-2193142255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  GSBRNA2T00015701001  93 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 142
                          59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.37E-3492152No hitNo description
SMARTSM003801.5E-3693156IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2393151IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-3293151IPR001471AP2/ERF domain
PROSITE profilePS5103223.16993150IPR001471AP2/ERF domain
PfamPF008471.5E-1494142IPR001471AP2/ERF domain
PRINTSPR003672.1E-1194105IPR001471AP2/ERF domain
PRINTSPR003672.1E-11116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MATTMDYYNS KTFQQTDPFG GELMEALLPF IKSPPTDSPA SAFAFASYPD VCLTQPIPNV  60
SSDLNQTHSY SNLLSPKPVP MKQTASPPKP MKLYRGVRQR HWGKWVAEIR LPRNRTRLWL  120
GTFDTAEEAA LAYDKAAYKL RGDFARLNFP NLRGEFGEYQ PLQSPVDDKL EAICKSLAET  180
QKPTKKSSSR KRSSTAKQPE EVKTEDYSSV VSPPSTESYG SPLSDLTFVD VEEEEQPWNV  240
NFALEKYPSY EIDWDSILST *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2192158470ATERF1
3gcc_A3e-2192158470ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.67600.0root| seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00015701001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894147e-59AC189414.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061K11, complete sequence.
GenBankAK3529457e-59AK352945.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-I08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013748582.10.0ethylene-responsive transcription factor RAP2-13-like
RefseqXP_013748584.10.0ethylene-responsive transcription factor RAP2-13-like
SwissprotQ9LM151e-105RA213_ARATH; Ethylene-responsive transcription factor RAP2-13
TrEMBLA0A078G7G20.0A0A078G7G2_BRANA; BnaA09g30810D protein
TrEMBLA0A3P5Y3Q30.0A0A3P5Y3Q3_BRACM; Uncharacterized protein
STRINGBra031371.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.15e-87ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  3. Rudnik R,Bulcha JT,Reifschneider E,Ellersiek U,Baier M
    Specificity versus redundancy in the RAP2.4 transcription factor family of Arabidopsis thaliana: transcriptional regulation of genes for chloroplast peroxidases.
    BMC Plant Biol., 2017. 17(1): p. 144
    [PMID:28835225]