PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00015923001
Common NameGSBRNA2T00015923001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 1898aa    MW: 213924 Da    PI: 6.8732
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00015923001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.7e-19122212498
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                           ++ +   +++rl+lp +f +e+g++k++  ++ l   +g +W  +l  + ++gr++ ++GWk+FvkangLk g++ +++l++ +++++v
  GSBRNA2T00015923001 122 FTLAPVDVRHCRLRLPMQFSRENGINKPG--KIYLLGNDGSKWLANL-LQESRGRMTVGDGWKSFVKANGLKIGESYTLELNW-EDTTPV 207
                          5556667899**************99776..8***************.78999999*************************99.888899 PP

                          EEEE- CS
                   B3  94 vkvfr 98 
                          ++++ 
  GSBRNA2T00015923001 208 LSLCP 212
                          99986 PP
2B362.95.1e-20278368195
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ ++++d+l++grl+lp +f++e++++   + ++tl  ++g +W   l    ++gr+ l+kGWk+F+kangLk+gD+++++ ++ ++ 
  GSBRNA2T00015923001 278 FLTLTITPDSLRHGRLRLPLEFMTENSMNR--PGDITLLGKDGAKWLASLL-LERRGRMCLGKGWKDFAKANGLKTGDSITLESIW-EDS 363
                          778899********************9885..558***************6.55556778***********************999.555 PP

                          ..EEE CS
                   B3  91 elvvk 95 
                          ++v++
  GSBRNA2T00015923001 364 TPVLR 368
                          56665 PP
3B364.22e-205846681098
                          HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                            +++rl+lp +f++e+g++k++  ++ l  ++g +W  +l    ++gr++l++GWk+FvkangLk+g+++++kl++ +++++v++++ 
  GSBRNA2T00015923001 584 DVRNCRLRLPMQFTRENGINKPG--KIYLLGKDGSKWLANL-LLESRGRMTLGDGWKSFVKANGLKTGESFTLKLNW-EDATPVLSLCP 668
                          5679**************99776..8***************.68888899*************************99.89999999986 PP
4B347.92.5e-15834920797
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          ++   + + l lp +f++++g+ +++  ++tl  +sg +W  +l    k+g++ l++GWk+F++ang+ +g+++v++l+ ++++  v+k+
  GSBRNA2T00015923001 834 TPEGVRDCKLQLPSQFMRTNGIMNPG--KITLLGRSGMKWFAYL--LSKDGTIALENGWKGFCEANGVMVGESFVLELIPTEDADHVFKF 919
                          566678899***********877544..8***************..9999***************************9987777777776 PP

                          E CS
                   B3  97 f 97 
                          +
  GSBRNA2T00015923001 920 Y 920
                          5 PP
5B351.71.6e-1611811270196
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88  
                           f++ ++p+ +++++rl+lp+ f++e+g++  ++ ++ +  ++g +W ++l  +kk+  + ++kGWkeFvkangL++g ++ ++  + +
  GSBRNA2T00015923001 1181 FVTFTLPPEYSTLCRLTLPNLFVKENGIS--TPAEICVLGKDGTKWPITLLLDKKG-IMSFGKGWKEFVKANGLETGFTLKLM--W-E 1262
                           677889999*****************998..6679***************777776.5689****************999999..4.4 PP

                           EE..EEEE CS
                   B3   89 efelvvkv 96  
                           ++++ +++
  GSBRNA2T00015923001 1263 DTTPSFSL 1270
                           55555555 PP
6B364.81.3e-2013601452397
                           EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3    3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90  
                            ++++ ++l ++ l+lp+ f++++g+   +  +++l d  grsW + l+++ +s+ ++++ GW++F++ ngL++g f++Fkl+g+ e+
  GSBRNA2T00015923001 1360 VAFVTDSSLDTDTLYLPRYFTSSNGLTR-KCLKIVLIDGGGRSWAMDLSFNESSDIFYISPGWRSFCDKNGLEAGGFFTFKLVGN-EE 1445
                           67889999999*************9986.557***************************************************95.55 PP

                           ..EEEEE CS
                   B3   91 elvvkvf 97  
                           ++v++++
  GSBRNA2T00015923001 1446 TPVLSFC 1452
                           5887776 PP
7B349.38.8e-1615181608197
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88  
                           f++ ++p+d+ +++ l+lpk f++e+g++k++  ++ l  ++g +W  +l  +kk+  + l+kGWk+Fvkang+++g +  +kl++ +
  GSBRNA2T00015923001 1518 FITFTLPPDYATLDKLTLPKLFVKENGINKPG--EIYLLGKDGTKWLTRLLLDKKG-LMRLGKGWKDFVKANGVESGFT--LKLIW-E 1599
                           778889*********************99766..8***************776665.568****************955..55557.6 PP

                           EE..EEEEE CS
                   B3   89 efelvvkvf 97  
                           ++++ ++++
  GSBRNA2T00015923001 1600 DATPSFSLC 1608
                           666766665 PP
8B343.46e-1416731767199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88  
                           f++  +++ +l+ +r++lp +f+++  ++k++   + l  ++  +W  +l ++ ++gr+ l+kGW  F+k+n+ k+g++v+++ ++ +
  GSBRNA2T00015923001 1673 FLTLAITPTSLRCNRMRLPIPFLRKSCMDKPG--VIYLLGKDDTKWMANL-IQEGDGRMKLGKGWTAFAKENEFKAGESVTLESIW-E 1756
                           666778999999*************9666555..7***************.58888899************************999.8 PP

                           EE..EEEEE-S CS
                   B3   89 efelvvkvfrk 99  
                           +++++++++r+
  GSBRNA2T00015923001 1757 DETPMIRFLRT 1767
                           8889*999986 PP
9B341.91.8e-1318011892296
                           EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                   B3    2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88  
                           ++ ++++   k ++l+lp +f++++g++k +  ++tl de+  + + +l    + g +  ++GW eF++ang+k g++++++ +++ +
  GSBRNA2T00015923001 1801 VTLTLKHEDVKACMLILPSQFLKANGINKLG--KITLLDENEVELSAYL--LSREGIVAVESGWGEFCEANGVKLGESFTLECIKEqD 1884
                           55566677778899************99766..8***************..88888899***********************998878 PP

                           EE..EEEE CS
                   B3   89 efelvvkv 96  
                           e+ +v+kv
  GSBRNA2T00015923001 1885 ETAPVLKV 1892
                           88787776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-20117213IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-20117214IPR015300DNA-binding pseudobarrel domain
CDDcd100179.84E-16118212No hitNo description
PfamPF023625.8E-19119212IPR003340B3 DNA binding domain
PROSITE profilePS5086314.649119214IPR003340B3 DNA binding domain
SMARTSM010199.8E-29119214IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-20268369IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-21274369IPR015300DNA-binding pseudobarrel domain
CDDcd100177.27E-18278370No hitNo description
PfamPF023622.1E-19278369IPR003340B3 DNA binding domain
PROSITE profilePS5086315.256278373IPR003340B3 DNA binding domain
SMARTSM010191.0E-29278373IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-22570675IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-22572674IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.819575670IPR003340B3 DNA binding domain
SMARTSM010192.4E-27575670IPR003340B3 DNA binding domain
CDDcd100171.90E-16579668No hitNo description
PfamPF023628.0E-20581668IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-7725794IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-9730794IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-5733794No hitNo description
PROSITE profilePS508637.754734827IPR003340B3 DNA binding domain
SMARTSM010198.2E-6734827IPR003340B3 DNA binding domain
SuperFamilySSF1019361.8E-17824910IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-16824916IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-12827920No hitNo description
PROSITE profilePS5086313.07828923IPR003340B3 DNA binding domain
SMARTSM010194.5E-18828923IPR003340B3 DNA binding domain
PfamPF023623.5E-14833921IPR003340B3 DNA binding domain
SMARTSM010195.0E-59821069IPR003340B3 DNA binding domain
SuperFamilySSF1019361.18E-89881068IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-99931067IPR015300DNA-binding pseudobarrel domain
CDDcd100178.72E-99931064No hitNo description
PROSITE profilePS508639.5029941069IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-1511751264IPR015300DNA-binding pseudobarrel domain
CDDcd100172.58E-1511791272No hitNo description
Gene3DG3DSA:2.40.330.102.0E-1411791268IPR015300DNA-binding pseudobarrel domain
PfamPF023625.1E-1511811271IPR003340B3 DNA binding domain
PROSITE profilePS5086312.30811811274IPR003340B3 DNA binding domain
SMARTSM010198.7E-2311811274IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-2013511453IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-2213551453IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.98813581454IPR003340B3 DNA binding domain
CDDcd100173.80E-1813581453No hitNo description
PfamPF023629.1E-1913591452IPR003340B3 DNA binding domain
SMARTSM010193.3E-2613591455IPR003340B3 DNA binding domain
SuperFamilySSF1019361.69E-1515121599IPR015300DNA-binding pseudobarrel domain
CDDcd100173.78E-1515161609No hitNo description
Gene3DG3DSA:2.40.330.102.4E-1415171600IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-1415181608IPR003340B3 DNA binding domain
PROSITE profilePS5086312.97115181611IPR003340B3 DNA binding domain
SMARTSM010194.7E-2315181611IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-1416631774IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1616691770IPR015300DNA-binding pseudobarrel domain
PfamPF023628.4E-1316731767IPR003340B3 DNA binding domain
SMARTSM010194.9E-1916731768IPR003340B3 DNA binding domain
PROSITE profilePS5086312.56216731768IPR003340B3 DNA binding domain
CDDcd100171.29E-1216781766No hitNo description
Gene3DG3DSA:2.40.330.102.4E-1317961886IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-1417981883IPR015300DNA-binding pseudobarrel domain
CDDcd100173.55E-1117991882No hitNo description
PfamPF023621.2E-1218001892IPR003340B3 DNA binding domain
PROSITE profilePS5086310.10918001896IPR003340B3 DNA binding domain
SMARTSM010199.7E-1718001896IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1898 aa     Download sequence    Send to blast
MMFQVSDVGH RDVETPSSNN GQDSIGSMNK KHPYARPEAG FSSNHGDNQD NDELPRKRNY  60
PETEKGSSSR HSCIVADVTT ASSLHTYTPV FLTQDFTSLG GLKGKGSPKR IISSMGTRFV  120
TFTLAPVDVR HCRLRLPMQF SRENGINKPG KIYLLGNDGS KWLANLLQES RGRMTVGDGW  180
KSFVKANGLK IGESYTLELN WEDTTPVLSL CPTDHHSVGI RADGECSEAS ENESLPIKPS  240
SGTEVIKYDN RKDESSSWER EKNHLRSRDS SSASQNRFLT LTITPDSLRH GRLRLPLEFM  300
TENSMNRPGD ITLLGKDGAK WLASLLLERR GRMCLGKGWK DFAKANGLKT GDSITLESIW  360
EDSTPVLRLL HIESTDDRRQ QDECSKAREK ESAFTEPSSG NKTRKLESNR EESRIYPLTR  420
LDSSLVNQNR FETSTVRYGA HDYQIGEIVV FRDERDMMFQ VSDLGPRFSE IQNVLAPSSN  480
SDQENIGSIS IIRKETGFSL YDGDDQYNIE LPRKKKAKKN NPGTEADSSP ERSCFVAHVT  540
ASNLHTDAPH LPQDFTSSNS PTQIVSSYLS SEKQLATFTL APVDVRNCRL RLPMQFTREN  600
GINKPGKIYL LGKDGSKWLA NLLLESRGRM TLGDGWKSFV KANGLKTGES FTLKLNWEDA  660
TPVLSLCPPE CSIDSREGGE CSETIEKEPL PIVLSCEKEI SKDDENRKKE SSSWERETNL  720
LIWRDSTVLS QNRCLTLTIT PDSLKHGRLR LPLEFMTDNS MNKPGEITLL GKDGVKWLVS  780
LLLEKRGRMS LGKGSGNKTR KAENRREGSS SWELEKRRYS SSAFQNRIVI LTLTPEGVRD  840
CKLQLPSQFM RTNGIMNPGK ITLLGRSGMK WFAYLLSKDG TIALENGWKG FCEANGVMVG  900
ESFVLELIPT EDADHVFKFY SNYGYHIHKC SFLAMSFNLL YLMSHMRFTK FLIEANAETA  960
DTQGHATDFV ARFFSHAGLM SFISISRRSV PSTIPSDFFS NYIKDLETTT AELKSDSSLD  1020
ITWKVKLTGR ILNDGWGDFA VANSLQIGNV VLVRYEGGTV FHVSDLGPSF SQIRDIKPPK  1080
QNIDDDDEVP LNKKVKTNIY ETEADSCLKA FLTDSSLHTD TLHFTSSNAL SRNCSEAHSA  1140
QLSNEDMERE REEDESLIKK KLKPKQRPVS YSSYSPCHKR FVTFTLPPEY STLCRLTLPN  1200
LFVKENGIST PAEICVLGKD GTKWPITLLL DKKGIMSFGK GWKEFVKANG LETGFTLKLM  1260
WEDTTPSFSL CCPESASDKD EEECLESIKK QSLSIDRRIR DKPGKRKNNK EEKKSWEREK  1320
IHLRGRDVGD FEEVPINKKV KTDSHGTDAA SSSLDNSCFV AFVTDSSLDT DTLYLPRYFT  1380
SSNGLTRKCL KIVLIDGGGR SWAMDLSFNE SSDIFYISPG WRSFCDKNGL EAGGFFTFKL  1440
VGNEETPVLS FCPMVSIDSR SQKDCFEAHS TEVSNEEEEI ERERNEEETL MDIEEKKKSK  1500
PEQRPVSYSS YSPCYKRFIT FTLPPDYATL DKLTLPKLFV KENGINKPGE IYLLGKDGTK  1560
WLTRLLLDKK GLMRLGKGWK DFVKANGVES GFTLKLIWED ATPSFSLCCA ESTSDKDEEE  1620
YLETIKKQSL SIDRRIRDKI SKVENDKEEK RSWEREKIDM RGRDSTTSSQ KQFLTLAITP  1680
TSLRCNRMRL PIPFLRKSCM DKPGVIYLLG KDDTKWMANL IQEGDGRMKL GKGWTAFAKE  1740
NEFKAGESVT LESIWEDETP MIRFLRTESE SSKANKKESI YTEDTESRTR DSSTEIHARF  1800
VTLTLKHEDV KACMLILPSQ FLKANGINKL GKITLLDENE VELSAYLLSR EGIVAVESGW  1860
GEFCEANGVK LGESFTLECI KEQDETAPVL KVMFSGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00015923001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069548e-54AC006954.8 Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete sequence.
GenBankCP0026858e-54CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013696586.10.0B3 domain-containing protein REM-like 1 isoform X1
RefseqXP_013735592.10.0B3 domain-containing protein REM-like 1 isoform X1
TrEMBLA0A078G7V60.0A0A078G7V6_BRANA; BnaC03g27030D protein
STRINGBo3g042160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150791619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.10.0B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]