PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00015950001

Common Name

GSBRNA2T00015950001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 547aa MW: 59742.3 Da PI: 8.6218

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00015950001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.5	1e-17	284	333	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq GSBRNA2T00015950001 284 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 333 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.2E-23	281	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.225	282	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.9E-19	283	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-15	284	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.89E-15	284	335	No hit	No description
SMART	SM00353	4.4E-13	288	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MELPQPRPFK AQGRKPTHDF LSLCSHPTLQ PDPKPTPPPS SQAGSHLKTH DFLQPLDCVG 60 AKEETSRVDT TRIASEKPPP PAPPPPLQHV LPGGIGTYTI SPIPYFHNQQ RIPKPELSPP 120 MMFTAAAQAG GGNERNVVDE ISNSNSSSYA AAASGFTLWD ESGSGKKGQT RKENNAGERA 180 SIRADGAATM GQWPAVERRS QSLTNTPLSG FSSRSSSQGS GLKSQSFMDM LRSAKGTSQD 240 DDLDDEEDFV TKKESSSTSQ IHRDLRVKAE ARGVGNDQKL NTPRSKHSAT EQRRRSKIND 300 RFQMLRQLIP NSDQKRDKAS FLLEVIEYIQ FLQEKTSKYE TPYQGWNHEP AKLLNWQRNN 360 QQLVPEGTVA FAPKLEEEKN NIPVPVLGTT QGVVIDRPET LNRATPATGA FPLSAQSNSF 420 ISPVIAGNPV NQLHTRVAAS ETLEPSQSSR THTQPLKEEG GDEEVHAGNI SISSVYSQGL 480 AKTLREALEN SGVDLTKASI SVEIELAKQS SSFKDHEPRG LVSTGNDDPK QTRQPKRLKT 540 NNNNTS*

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MELPQPRPFK AQGRKPTHDF LSLCSHPTLQ PDPKPTPPPS SQAGSHLKTH DFLQPLDCVG  60
AKEETSRVDT TRIASEKPPP PAPPPPLQHV LPGGIGTYTI SPIPYFHNQQ RIPKPELSPP  120
MMFTAAAQAG GGNERNVVDE ISNSNSSSYA AAASGFTLWD ESGSGKKGQT RKENNAGERA  180
SIRADGAATM GQWPAVERRS QSLTNTPLSG FSSRSSSQGS GLKSQSFMDM LRSAKGTSQD  240
DDLDDEEDFV TKKESSSTSQ IHRDLRVKAE ARGVGNDQKL NTPRSKHSAT EQRRRSKIND  300
RFQMLRQLIP NSDQKRDKAS FLLEVIEYIQ FLQEKTSKYE TPYQGWNHEP AKLLNWQRNN  360
QQLVPEGTVA FAPKLEEEKN NIPVPVLGTT QGVVIDRPET LNRATPATGA FPLSAQSNSF  420
ISPVIAGNPV NQLHTRVAAS ETLEPSQSSR THTQPLKEEG GDEEVHAGNI SISSVYSQGL  480
AKTLREALEN SGVDLTKASI SVEIELAKQS SSFKDHEPRG LVSTGNDDPK QTRQPKRLKT  540
NNNNTS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.14286	0.0	leaf\| seed\| vegetative meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00015950001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013692206.1	0.0	transcription factor BIM1-like isoform X1
Swissprot	Q9LEZ3	0.0	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A078G946	0.0	A0A078G946_BRANA; BnaC09g47800D protein
STRING	Bra009322.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6967	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	0.0	bHLH family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]