PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00016066001
Common NameGSBRNA2T00016066001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 224aa    MW: 25323.2 Da    PI: 5.5841
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00016066001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26.3e-08129170854
                          HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          + r+R +ri +++  L++l+P       +K++ a++L +A++Y+k L
  GSBRNA2T00016066001 129 AARQRHERISERIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 170
                          569******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.449121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-13126180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-10127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.21E-10127175No hitNo description
PfamPF000105.1E-5130170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MNNNNMNPSL DQNYTWNNII MNNKNDHHHN DPIDMAMNQH TQLHIFNPFT SSSSSFHFPP  60
LSSSLTTTTF FSGDQEEEED EEEPVEELSA MKEMMYKIAA MQPVDIDPAT VKKPKRRNVR  120
ISDDPQSVAA RQRHERISER IRILQRLVPG GTKMDTASML DEAIRYVKFL KRQIRLLNNP  180
PPPQDQASQV VTTSWVSQPP PPDFGGGGGG DWYKSGENSI NSN*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}.
UniprotTISSUE SPECIFICITY: Gynoecium. {ECO:0000269|PubMed:17855426}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00016066001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0207521e-126AB020752.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MTH16.
GenBankAL3539941e-126AL353994.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F17I14 (ESSA project).
GenBankCP0026881e-126CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013739717.11e-165transcription factor HEC3-like
SwissprotQ9LXD81e-84HEC3_ARATH; Transcription factor HEC3
TrEMBLA0A078G9C41e-165A0A078G9C4_BRANA; BnaC09g46950D protein
STRINGBo9g173860.11e-164(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44492754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.11e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]