PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00016178001

Common Name

GSBRNA2T00016178001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 271aa MW: 29655.9 Da PI: 9.1009

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00016178001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.4	7e-13	87	131	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+++++ + ++ G+g Wk I+r + k+Rt+ q+ s+ qky GSBRNA2T00016178001 87 AWTESEHKRFLLGLQRVGKGGWKGISRDFVKTRTPTQVASHAQKY 131 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.901	80	136	IPR017930	Myb domain
SuperFamily	SSF46689	1.17E-15	82	136	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-16	83	134	IPR006447	Myb domain, plants
SMART	SM00717	1.4E-6	84	134	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-8	86	131	IPR009057	Homeodomain-like
CDD	cd00167	2.04E-6	87	132	No hit	No description
Pfam	PF00249	1.1E-9	87	131	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MAAVSSSSET GGGAAGKGEI MLFGVRVVVD PMRKCVSLNN LSDYDKSSPE EENEPDAITA 60 AGYASANDAV QITPSTVGNR ERKRGVAWTE SEHKRFLLGL QRVGKGGWKG ISRDFVKTRT 120 PTQVASHAQK YFLRRTNLNR RRRRSSLFDI TTETVIGMHM EQDHAQENSS LPETNISSGH 180 QVMQVFPTRT EENAPQTFHP NDLSSNRVHP VPVTFQANPA FNLNTDAAPV SLNLSLSFNL 240 NEPSNSRRSA FTMMPSFSDG DSNSNTIRVA *

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00016178001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353076	1e-156	AK353076.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-16-O16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009117571.1	0.0	PREDICTED: transcription factor MYB1R1
Swissprot	Q2V9B0	1e-53	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A078G8H3	0.0	A0A078G8H3_BRANA; BnaA09g44370D protein
STRING	Bra031060.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	1e-110	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]