PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00016676001
Common NameGSBRNA2T00016676001, LOC106377346
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 255aa    MW: 28548.5 Da    PI: 5.9004
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00016676001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.12e-4161353128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                          +GfrF+Ptd elv +yL++k +g       ++++vi++vdi++++Pw+Lp  ++++++++ wyfF +++++y++g+r++r+tksgyWk+t
  GSBRNA2T00016676001   6 VGFRFRPTDVELVEHYLRPKNNGGGsttsSQVDQVINTVDICNLDPWELPplSRIASSDQVWYFFGRKESRYNRGERQKRKTKSGYWKKT 95 
                          8*******************999887776777779**************9666999999******************************* PP

                  NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          g++ ++++k  ++e++g k++L+fy     +g++++Wvmhey++
  GSBRNA2T00016676001  96 GNTLPITRKrgNHETIGEKRVLMFY----MSGSRSNWVMHEYHA 135
                          ********9777788**********....78999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.3364154IPR003441NAC domain
SuperFamilySSF1019411.57E-435154IPR003441NAC domain
PfamPF023654.6E-256134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGNNMVGFRF RPTDVELVEH YLRPKNNGGG STTSSQVDQV INTVDICNLD PWELPPLSRI  60
ASSDQVWYFF GRKESRYNRG ERQKRKTKSG YWKKTGNTLP ITRKRGNHET IGEKRVLMFY  120
MSGSRSNWVM HEYHASCLSP NDSGAYTICK VQFKGEASEI SSSSGVDHVV HSHSLPTPMN  180
NPGGSEGLEN SSSVLDNQQA MQFEAETQMA FDILPSYDWK SLLDDDDADE QNKTASMPSQ  240
RPVSSLVTYS SDDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-22713418139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00016676001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013673020.10.0NAC domain-containing protein 4
SwissprotO819149e-74NAC5_ARATH; NAC domain-containing protein 5
TrEMBLA0A078IY980.0A0A078IY98_BRANA; BnaC08g49760D protein
TrEMBLA0A3P6GIK60.0A0A3P6GIK6_BRAOL; Uncharacterized protein
STRINGBo8g117560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.12e-68NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]