PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00016677001
Common NameGSBRNA2T00016677001, LOC106374063
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 243aa    MW: 27507.7 Da    PI: 6.5139
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00016677001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.43.3e-4151323128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          +G+rF Ptdee+v++yL+ k  g +   +++evi++v+i++++PwdLp  ++++++++ w+fF ++++ky++g+r++r+tksg+Wk+tg+
  GSBRNA2T00016677001   5 VGLRFIPTDEEIVDHYLRLKNIGGSntSHVDEVISTVNICNFDPWDLPpqSRIASSDQVWHFFGRKESKYNKGERQKRKTKSGFWKKTGN 94 
                          7*****************997666645677789**************86458889999******************************** PP

                  NAM  89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + ++++k  +++++g k++Lvfy    ++g+k++Wvmhey++
  GSBRNA2T00016677001  95 TLPIKRKrgNRQKIGEKQVLVFY----KNGSKSNWVMHEYHA 132
                          *****99888889**********....7899*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.2023151IPR003441NAC domain
SuperFamilySSF1019412.75E-424151IPR003441NAC domain
PfamPF023651.1E-225131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MENLVGLRFI PTDEEIVDHY LRLKNIGGSN TSHVDEVIST VNICNFDPWD LPPQSRIASS  60
DQVWHFFGRK ESKYNKGERQ KRKTKSGFWK KTGNTLPIKR KRGNRQKIGE KQVLVFYKNG  120
SKSNWVMHEY HASCLSPPQS GAYTICKVQF KGEASEISSS SGVDNVEHSP TPMTNPGGSE  180
SPSQFSGFRD HQQEMQFESE TQTDFEELLS YDLNSLLDYD GDEQIEIASM QKSMTSIFIG  240
HI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-23613118139Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
180101KRKTKSGFWKKTGNTLPIKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00016677001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013669619.10.0NAC domain-containing protein 4
SwissprotO819142e-80NAC5_ARATH; NAC domain-containing protein 5
TrEMBLA0A078J0S10.0A0A078J0S1_BRANA; BnaC08g49770D protein
STRINGBo8g117570.11e-165(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.16e-79NAC domain containing protein 4
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]