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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSBRNA2T00016821001 |
| Common Name | GSBRNA2T00016821001 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
Dof |
| Protein Properties |
Length: 402aa MW: 42635.6 Da PI: 9.1573 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSBRNA2T00016821001 | genome | Genoscope | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 120.7 | 5.2e-38 | 91 | 150 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
e+alkcprCdstntkfCy+nny+l+qPr+fCk+CrryWt+GGalr vPvGgg+r+nk+++
GSBRNA2T00016821001 91 ETALKCPRCDSTNTKFCYFNNYNLTQPRHFCKGCRRYWTRGGALRSVPVGGGCRRNKRTK 150
6789*****************************************************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 402 aa
Download sequence Send
to blast |
MVFSSFPSYP DSSNWQQQHQ PITTTVGFTG NNNISQQFLP HHPLPPQPQP QQTPPPLHNN 60
GNGGGGGGPG GLIRPGSMAE RARLANIPLP ETALKCPRCD STNTKFCYFN NYNLTQPRHF 120
CKGCRRYWTR GGALRSVPVG GGCRRNKRTK NSGGSSSSGN SKSQDSTTSN DQYHHRAMAN 180
NQMGPPSSTS LSSLLSSYNA GLIPGHDHNN NNNNILELGS SLSPLKLMHP SDFTDNFTLQ 240
YGAVSAPSYH TGGGSSGGSG GGGASTILTG LDQWRFPATH HQLPLLGGLE TSSSSGLYPF 300
DHQNPGYGLV TGSGQYRPKN IFHNLVSSSS SSASSAMVTA TASQLASVKM EDSNNQLNMS 360
RQLFGNEQEL WNIHGTAAST ATTSSWSDVS NNFSSSSTSN I*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Specific to both elongating procambial cells and to cells isodiametric in size that are presumably destined to develop into higher-order veins. Strongly expressed in advance of perceptible procambium formation. Expressed in the cells of prospective veins in leaf primordia of seedlings and cotyledons of developing embryos, and the vascular tissue of developing flower buds. {ECO:0000269|PubMed:17583520}. |
| Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously, especially in the vascular tissues, except in seeds, petals and anthers (PubMed:20807212). Specific to the vascular tissues in young leaves, cotyledons and flower buds (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) form a short-range concentration gradient that peaks at protophloem sieve elements (PSE) (PubMed:30626969). {ECO:0000269|PubMed:17583520, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:30626969}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Binds to 5'-TAAAGT-3' motif in REV promoter to triggers its transcription, thus regulating adaxial-abaxial polarity and influencing leaf axial patterning in an auxin transport- and response-dependent manner (e.g. IAA6 and IAA19 genes expression) (PubMed:20807212). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:17583520, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:30626969}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By cytokinin in procambium. {ECO:0000269|PubMed:30626969}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189646 | 0.0 | AC189646.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS009G14, complete sequence. |
