PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00016941001
Common NameGSBRNA2T00016941001, LOC106395680
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 187aa    MW: 20912.5 Da    PI: 6.7138
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00016941001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.83.9e-32104162159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+W+KYGqK+vk++ +prsYYrCt+++C+vkk+v+r aedpkvv++tYeg Hnh+
  GSBRNA2T00016941001 104 LDDGYRWKKYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAEDPKVVVTTYEGVHNHP 162
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-3291162IPR003657WRKY domain
SuperFamilySSF1182903.53E-2896163IPR003657WRKY domain
PROSITE profilePS5081129.36799164IPR003657WRKY domain
SMARTSM007749.1E-38104163IPR003657WRKY domain
PfamPF031069.2E-26105162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEGIDNTHSM LTLEEGENNP FSSFDDKQLM MMVPSLMFSG DMGTSSCSPA SFHMSSQPEN  60
FQGGGGGEPM EMGGLNDHNN KGKGKISSAL QRIAFHTRSD DDVLDDGYRW KKYGQKSVKN  120
NAHPRSYYRC TYHTCNVKKQ VQRLAEDPKV VVTTYEGVHN HPCEKLMETL SPLLRQLQFL  180
TRVSDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2694161774Probable WRKY transcription factor 4
2lex_A2e-2694161774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00016941001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300630.0KF430063.1 Brassica rapa WRKY transcription factor 56 (WRKY56) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691523.11e-140probable WRKY transcription factor 56
SwissprotQ8VWQ41e-101WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A078J1491e-139A0A078J149_BRANA; BnaCnng28950D protein
STRINGBo9g033920.11e-133(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.11e-104WRKY DNA-binding protein 56
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]