PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00017163001
Common NameGSBRNA2T00017163001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 415aa    MW: 47638.4 Da    PI: 7.5688
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00017163001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07428126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         ykt+lC  + ++G C+  ++C+FaHg
  GSBRNA2T00017163001  4 YKTKLCILYEKNGDCSK-PNCTFAHG 28
                         9****************.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-10234IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5333IPR000571Zinc finger, CCCH-type
SMARTSM003560.0094329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.225330IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-5428IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSLYKTKLCI LYEKNGDCSK PNCTFAHGVA ELRLPGESSS FRGKESQLDI PIDSCRRHNL  60
DGDLRDKLGR HFSPERRPSL DRSGRRVQRF NGHENPRSFE KRRDVDYREN RRFDERSDYA  120
GGLKAGSRIE VRERDERNKF LGYNNVLEEQ LKDVELDVKV LTDNKLRLEA AVERKAREAD  180
ILTSRIQELG TQLDREKEEC KRITSSTKKF VKEYNRFLRA QDDVRSSSSE VGNPTDDEEK  240
NGRNLRSASD LQNELHNTSS VSRKRHYVEQ QYTTKESVQD ALRGRGEEDK LENGKSPSRW  300
NRIPSKSFSE EESRVRNEED AMNKSSSKED TWKRRRLSSG TSSSNKVMSS TSMAARVSDE  360
VAEFDEENTR AAKGSPLISL PPPPPFRDAH FHGDEEEAKV DVNEQRKADD VDSV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332336KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.141150.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00017163001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013731348.10.0zinc finger CCCH domain-containing protein 40-like isoform X2
SwissprotQ93XW71e-174C3H40_ARATH; Zinc finger CCCH domain-containing protein 40
TrEMBLA0A078IYX00.0A0A078IYX0_BRANA; BnaA01g36550D protein
STRINGBra023860.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-168C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]