PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00017238001
Common NameGSBRNA2T00017238001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 340aa    MW: 38106.5 Da    PI: 4.8543
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00017238001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.77e-191157349
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           n++ r+ tf kR++g+lKKA+ELS+LC+++v+v+i s +++  e+
  GSBRNA2T00017238001 11 MTNSTARNQTFRKRKKGLLKKANELSTLCGVKVCVVINSCDNTETEF 57
                         6799***********************************99987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.273161IPR002100Transcription factor, MADS-box
CDDcd002661.03E-14383No hitNo description
PRINTSPR004041.2E-11323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-23395IPR002100Transcription factor, MADS-box
PfamPF003193.1E-181153IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MPRGRIKIEP MTNSTARNQT FRKRKKGLLK KANELSTLCG VKVCVVINSC DNTETEFWPS  60
REGAEAVHSA FMGVLPEERC KKMYDQERHL EERIQKGQAK AMRLQAENRE IELREVMFDL  120
FKGETLKPHH YDDPCFIGEL NHFIGDYVKN LSHRIEFLEA NGEPVPPNVA ATDASGPFVV  180
GTEGLVSNPT EAYDHMRQFD GMDMSVKEEA PGGFNDHDLN MNLEEPFQYQ TPANFDDQTQ  240
PMFYGSSQDM YTGLNHDQGQ SSNQYPNSNQ SFVGLLMGQP QQMSDGQDPA TVASMDDKNN  300
GYHQLLITSQ MPLTTTAAAA ADLSGHRIDN GWLTRFGLD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00017238001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130038.20.0PREDICTED: agamous-like MADS-box protein AGL92
TrEMBLA0A078JXY60.0A0A078JXY6_BRANA; BnaAnng37950D protein
STRINGBra020552.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14795620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.17e-41M-type_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]