PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00017422001
Common NameGSBRNA2T00017422001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 273aa    MW: 30936.6 Da    PI: 8.8958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00017422001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00099527123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ykC  C ksF +   L  H+r+H
  GSBRNA2T00017422001  5 YKCRFCFKSFFNGRALGGHMRSH 27
                         9********************99 PP
2zf-C2H215.54.8e-05164186123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cgk+F++   L  H  +H
  GSBRNA2T00017422001 164 FTCETCGKVFKSYQALGGHRASH 186
                          89***********9999998887 PP
3zf-C2H210.70.0016209231123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++F +   L  H r+H
  GSBRNA2T00017422001 209 HECPICLRVFASGQALGGHKRSH 231
                          79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.9E-9427No hitNo description
PfamPF139123.1E-4429IPR007087Zinc finger, C2H2
SMARTSM003550.044527IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.889527IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576672.9E-9159186No hitNo description
PROSITE profilePS5015711.053164191IPR007087Zinc finger, C2H2
SMARTSM003550.02164186IPR015880Zinc finger, C2H2-like
PfamPF139124.2E-11164188IPR007087Zinc finger, C2H2
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
SMARTSM003550.23209231IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058209231IPR007087Zinc finger, C2H2
PfamPF139124.5E-12209231IPR007087Zinc finger, C2H2
PROSITE patternPS000280211231IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MESYYKCRFC FKSFFNGRAL GGHMRSHMPS LHKFSIQEEE GERASQVNDE TESDVSSSSM  60
MDDDDPKVAN ESETESSRNI TNPTRKRSKR TRKLETFATK KTKASQLGYK TEPECEPPHS  120
SASDTTTDED LAFCLMLLSR DKWMKKKNKA TSEGYTKSSK KGRFTCETCG KVFKSYQALG  180
GHRASHKKNR VSNKTEQRSE TEYPERRIHE CPICLRVFAS GQALGGHKRS HGIGNLSVDH  240
HHQVRVESVK QRMIDLNLPA PTDEEEVSVV FQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00017422001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640190.20.0zinc finger protein ZAT9-like
RefseqXP_022570193.10.0zinc finger protein ZAT9-like
RefseqXP_022570194.10.0zinc finger protein ZAT9-like
RefseqXP_022570195.10.0zinc finger protein ZAT9-like
RefseqXP_022570196.10.0zinc finger protein ZAT9-like
RefseqXP_022570197.10.0zinc finger protein ZAT9-like
RefseqXP_022570198.10.0zinc finger protein ZAT9-like
RefseqXP_022570199.10.0zinc finger protein ZAT9-like
RefseqXP_022570200.10.0zinc finger protein ZAT9-like
SwissprotQ9M2021e-126ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A078K1140.0A0A078K114_BRANA; BnaCnng73530D protein
STRINGBo6g077190.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-123C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]