PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00017502001
Common NameGSBRNA2T00017502001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 230aa    MW: 25764.8 Da    PI: 6.5179
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00017502001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.3e-102167447
                         S-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  4 WTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                         WT eE +l+ +a + lG +    +W+ Ia+ ++ g++  +++ r+ k+
  GSBRNA2T00017502001 21 WTVEENKLFEKALAVLGDKddleSWSNIAALIP-GKSVDDVIKRYKKL 67
                         *********************************.***********996 PP
2Myb_DNA-binding50.25.8e-16109153347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky
  GSBRNA2T00017502001 109 PWTEEEHRRFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 153
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-5967IPR009057Homeodomain-like
SuperFamilySSF466892.62E-91073IPR009057Homeodomain-like
PROSITE profilePS512938.3611670IPR017884SANT domain
SMARTSM007179.2E-61770IPR001005SANT/Myb domain
CDDcd001671.08E-82167No hitNo description
PfamPF002496.3E-92167IPR001005SANT/Myb domain
PROSITE profilePS5129420.97102158IPR017930Myb domain
SuperFamilySSF466898.97E-18104157IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-18105157IPR006447Myb domain, plants
SMARTSM007171.9E-13106156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-13106153IPR009057Homeodomain-like
CDDcd001672.43E-11109154No hitNo description
PfamPF002494.1E-13109153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MNGGFQENTN WIFQEVKDAM WTVEENKLFE KALAVLGDKD DLESWSNIAA LIPGKSVDDV  60
IKRYKKLEDD ISDIEAGLVP DPGYCSDASA GDYFFGLENS GYERKKGVPW TEEEHRRFLM  120
GLKKYGKGDW RNIARNFVTT RTPTQVASHA QKYFIRQLTD CKDKRRSSIH DITTVNVPDA  180
KALATATPAA ATVSPTPTNP FDVYFPPKPH HSLAFSPASS YHNAFPQWS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.73811e-156flower
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00017502001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125429.11e-153PREDICTED: transcription factor DIVARICATA
RefseqXP_013720198.11e-153transcription factor DIVARICATA-like
SwissprotQ8S9H76e-69DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A078IW801e-171A0A078IW80_BRANA; BnaAnng13960D protein
STRINGBra028892.1-P1e-152(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148841619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.11e-104MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]