PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00017525001
Common NameGSBRNA2T00017525001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 324aa    MW: 37280.3 Da    PI: 6.8512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00017525001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11155203152
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                          +r +h  +Er+RR+++N+  + Lr+llP++   + ++ + a+i+  A++Y k
  GSBRNA2T00017525001 155 QRISHIVVERNRRRQMNEHVNSLRSLLPPS---YIQRGDQASIVGGAINYAK 203
                          699***************************...9****************66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.85E-9153210No hitNo description
PROSITE profilePS5088814.945154205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-15154222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-9155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-12156219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-7160211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MESFQGHINP CFLDRKADTR SLEVQGFKEA QSFAFKEEEE ESMQDTVPFL QMLQSEEPSF  60
LRLLSLQNLK EPWEVESFLS QEGHPHFYQN QVSALYIEGA KQALSSQEAD MILLHSSSPQ  120
HKRKNNDLLA PDMTREKRKR RKTKPSKNIE EIESQRISHI VVERNRRRQM NEHVNSLRSL  180
LPPSYIQRGD QASIVGGAIN YAKVLEQIIQ SLESQKKTQQ SSEVENRVQE DETCVPSIET  240
TVIQNHVNLR VVCRKRQGGL IRGIISLEKL RLTVLHLNIS TLSRFYVSCC FNLKMEDGCE  300
LESADEIKKV AHQIFDMPMN LNN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121141KRKNNDLLAPDMTREKRKRRK
2136141KRKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.240900.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00017525001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022573551.10.0transcription factor bHLH67-like
SwissprotQ700E41e-137BH067_ARATH; Transcription factor bHLH67
TrEMBLA0A078J1M20.0A0A078J1M2_BRANA; BnaCnng29550D protein
STRINGfgenesh2_kg.5__2692__AT3G61950.11e-140(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.11e-139bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]