PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00017594001
Common NameGSBRNA2T00017594001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 295aa    MW: 33034.5 Da    PI: 6.4399
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00017594001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-172970245
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                         + W++eE+  lv+a+k+ G++ W+ Ia+ ++ gRt++++k++w+
  GSBRNA2T00017594001 29 DGWSEEEERVLVEAHKRIGNK-WAEIAKLIP-GRTENSIKNHWN 70
                         56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-26182IPR009057Homeodomain-like
PROSITE profilePS5129410.168122IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.7E-15235IPR009057Homeodomain-like
PROSITE profilePS5129423.7642377IPR017930Myb domain
SMARTSM007176.4E-152775IPR001005SANT/Myb domain
PfamPF002493.0E-153070IPR001005SANT/Myb domain
CDDcd001673.14E-123173No hitNo description
Gene3DG3DSA:1.10.10.601.1E-173671IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MISEKLEGRA GKQCRERWHN HLRPDIKKDG WSEEEERVLV EAHKRIGNKW AEIAKLIPGR  60
TENSIKNHWN ATKRRQNSKR KQKRRQENAD NDDSALSPAA KRPCILQDYI KSVYNNVENK  120
ASDDNKDENS ISVLSTPNLD QTYSDGDSTS SVLGDPYDEE LVYLQNIFAN HPVSLDNIGL  180
NQTSDEVNMI KNPSSQKSVW THHQDQAMVA VPENKPHLAS DIYLSYLLNG TASSYSNPHF  240
PSSSSSTSST TVEQGGHSEL LVPHANSTGE KREMDLMEML SGSIQGGNKC FPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-3417629104MYB PROTO-ONCOGENE PROTEIN
1h88_C8e-3417683158MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-3417683158MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-3417629104C-Myb DNA-Binding Domain
1msf_C1e-3417629104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17283KRRQNSKRKQKR
27885KRKQKRRQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During female gametogenesis, expressed in the female gametophyte at stage FG4 (four-nucleate stage) in all four nuclei. Expressed in the central cell in unfused polar nuclei at stage FG5 and secondary nucleus at stage FG6. Not expressed in mature female gametophytes (stage FG7). {ECO:0000269|PubMed:24068955}.
UniprotTISSUE SPECIFICITY: Expressed in ovary septum and stamen filament. {ECO:0000269|PubMed:24068955}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00017594001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013713690.10.0transcription factor MYB119-like
SwissprotQ9FIM41e-158MY119_ARATH; Transcription factor MYB119
TrEMBLA0A078K1F70.0A0A078K1F7_BRANA; BnaAnng38130D protein
STRINGBra020346.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-149myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]