PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00017800001

Common Name

GSBRNA2T00017800001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 384aa MW: 43126.1 Da PI: 7.8964

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00017800001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	84.8	8.2e-27	208	267	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ ++d+++ +tYeg+H+h+ GSBRNA2T00017800001 208 NDGCQWRKYGQKTAKTNPLPRAYYRCSMSsNCPVRKQVQRCgEDDTSAYMTTYEGNHDHP 267 8*************************99******934578899********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.4E-28	192	269	IPR003657	WRKY domain
PROSITE profile	PS50811	24.478	202	269	IPR003657	WRKY domain
SuperFamily	SSF118290	3.92E-24	203	269	IPR003657	WRKY domain
SMART	SM00774	7.0E-33	207	268	IPR003657	WRKY domain
Pfam	PF03106	5.8E-25	208	267	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MIKEEIDSCV HPLDGGMAES DKEVDLDATK AKVDKVREEN EKLKLLLSTV RTEYNSLQMH 60 VSNVIRQQHE ASMKLDDNGH EDLDVDISLT LGRSEQKISK KEEQVKKIIA ENNSIKNKEG 120 SEKKRWAHGL AFRIQSFEDP DTNQTMRLDN LSKEVKNKSV ENKYLFSRKD VKTARNEDQH 180 ELLERHEQPG LKKTRVCVKA PCEDPSINDG CQWRKYGQKT AKTNPLPRAY YRCSMSSNCP 240 VRKQVQRCGE DDTSAYMTTY EGNHDHPLPM EATHMAAGTS AAASLLQSGA SSSASLSHFF 300 PFHHFSVSTT NSHPTVTLDL TQPNYDPNQL PNYPLSSSSL SFSSSGRPSP SKSHTLSFSG 360 LRSQAPMNTY SHLSHQTRLF GRQ*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MIKEEIDSCV HPLDGGMAES DKEVDLDATK AKVDKVREEN EKLKLLLSTV RTEYNSLQMH  60
VSNVIRQQHE ASMKLDDNGH EDLDVDISLT LGRSEQKISK KEEQVKKIIA ENNSIKNKEG  120
SEKKRWAHGL AFRIQSFEDP DTNQTMRLDN LSKEVKNKSV ENKYLFSRKD VKTARNEDQH  180
ELLERHEQPG LKKTRVCVKA PCEDPSINDG CQWRKYGQKT AKTNPLPRAY YRCSMSSNCP  240
VRKQVQRCGE DDTSAYMTTY EGNHDHPLPM EATHMAAGTS AAASLLQSGA SSSASLSHFF  300
PFHHFSVSTT NSHPTVTLDL TQPNYDPNQL PNYPLSSSSL SFSSSGRPSP SKSHTLSFSG  360
LRSQAPMNTY SHLSHQTRLF GRQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-18	207	269	14	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00017800001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430052	0.0	KF430052.1 Brassica rapa WRKY transcription factor 36 (WRKY36) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001288882.1	0.0	probable WRKY transcription factor 36
Refseq	XP_013717326.1	0.0	probable WRKY transcription factor 36 isoform X1
Swissprot	Q9CAR4	1e-162	WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBL	A0A078J1W8	0.0	A0A078J1W8_BRANA; BnaA02g35700D protein
TrEMBL	A0A3P6AS17	0.0	A0A3P6AS17_BRACM; Uncharacterized protein
STRING	Bra007884.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13913	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69810.1	1e-135	WRKY DNA-binding protein 36

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Yang Y, et al. UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis. Nat Plants, 2018. 4(2): p. 98-107 [PMID:29379156]