PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00017993001
Common NameGSBRNA2T00017993001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 334aa    MW: 36634.7 Da    PI: 7.8686
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00017993001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-10170217455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  GSBRNA2T00017993001 170 SHSLAERARREKISERMTMLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 217
                          8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.26E-11164221No hitNo description
SuperFamilySSF474592.75E-17164235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-18166235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.624166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-7170217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEKQTLKYLP LGQSDPFGNV IGNGNGNEGT IGDLLGRFRN CPQESFSAGI RFPPYPGQFG  60
SDRDSNKSSL LDPDSDRVQT PKPNPRKRKS IPVGNGKGSP ASSSLTASHS KVSGENVVSK  120
DGKRSKQDEA GSSKNVIDKC DDSKGDNKDD ANPTKDYIHV RARRGQATDS HSLAERARRE  180
KISERMTMLQ DLVPGCNRIT GKAVMLDEII NYVQSLQRQV QFLSMKLATV NPRMEFNANA  240
ALSTEGESLT QSLYAMACSE QRLPSGGYYS LAKNMPRFSD THFPSSDGFV QTETQGFWEN  300
DLQSIVQMGF GDIQQQQSNN NCPEPTLQMK LEP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.139950.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00017993001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606780.10.0PREDICTED: transcription factor bHLH77-like isoform X2
SwissprotQ9LK480.0BH077_ARATH; Transcription factor bHLH77
TrEMBLA0A078J2C20.0A0A078J2C2_BRANA; BnaCnng29920D protein
STRINGBo1g101470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.11e-167bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]