PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00018011001
Common NameGSBRNA2T00018011001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 602aa    MW: 66386.4 Da    PI: 5.126
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00018011001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.14.2e-942336002374
                 GRAS   2 velLlecAeavssgdle.....laqalLarlselaspdgd......pmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                          +e+L+++Ae + +++++     laq +Larl+++ s + +      p+qR+a+++te L+  +++       + pp   s++n + ++aa
  GSBRNA2T00018011001 233 IEQLFNAAELIGNNNNNgdhtaLAQGILARLNHHLSYSNNnnnknpPFQRAASHITESLSL-INS-------SYPPL-ISPENLIFRIAA 313
                          6899******9997766666669**********95554433467779************86.444.......23333.345789****** PP

                 GRAS  81 lklfsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetger 164
                          +++fse+sP+l+f ++taNq Ile+ + e   +r+HiiDfd+++G+QW +L+q+LasR+ + + sl+iT++++p s+  ++ el+ t+e+
  GSBRNA2T00018011001 314 YRTFSETSPFLQFVNFTANQSILESCNDElgfDRIHIIDFDVGYGGQWSSLMQELASRRrNRASSLKITVFAPPPSTvsDEFELRFTEEN 403
                          ***************************99999************************99857778*********9988899********** PP

                 GRAS 165 LakfAeelgvpfefnvlvakrledlele..eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                          L++fA e+++pfe+++l  + l +  ++  +Lr +++Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+n+++
  GSBRNA2T00018011001 404 LRSFAGEVKIPFEIELLSLELLLNPAYWpvSLRSSEKEAVAVNLPVNSVVSG--------YLPLILRFLKQISPNVVVCSDRGCDRNDAP 485
                          ****************96666666566611566666*********9655554........5677************************** PP

                 GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                          F + +++al+y+++l++sl+a+   + +e+ +vEr++++++i++++++++++     e+   Wr+ + ++GF+p++ls++a++qa++ll+
  GSBRNA2T00018011001 486 FPNAVIHALQYHTTLLESLDAN---QGHEDESVERFWVQPSIEKLLMKRHRW----IERSPPWRSLFAQCGFSPASLSQTAEAQAECLLQ 568
                          **********************...679999*********************....89999***************************** PP

                 GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          + +++g++ve+++gslv++W++++Lv+vS W+
  GSBRNA2T00018011001 569 RSPVRGFHVEKRQGSLVMCWQRKELVTVSTWK 600
                          *******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.843206580IPR005202Transcription factor GRAS
PfamPF035141.4E-91233600IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MPLSFERFQG EGAFGVVSSL YSDPQKIWFS QDKTGAEQDL GYVVGGVLPE PTSVLDALRS  60
PSPLASHSST TTTMTLSSSH GGGTVTAATT AGDDKCSQMG LDDLDDGGQE QSILRLIMDP  120
GQGFGVFDPG FGFGSGSVPV NPLLSSSFPY QEELTFSNPP SSPPAKRFNS GSHQPVFPFP  180
DPDPGHDPFL VRRQQQFQFP FQFHQQQQLP SSSSSLPPVP PPGTAGDDQT VIIEQLFNAA  240
ELIGNNNNNG DHTALAQGIL ARLNHHLSYS NNNNNKNPPF QRAASHITES LSLINSSYPP  300
LISPENLIFR IAAYRTFSET SPFLQFVNFT ANQSILESCN DELGFDRIHI IDFDVGYGGQ  360
WSSLMQELAS RRRNRASSLK ITVFAPPPST VSDEFELRFT EENLRSFAGE VKIPFEIELL  420
SLELLLNPAY WPVSLRSSEK EAVAVNLPVN SVVSGYLPLI LRFLKQISPN VVVCSDRGCD  480
RNDAPFPNAV IHALQYHTTL LESLDANQGH EDESVERFWV QPSIEKLLMK RHRWIERSPP  540
WRSLFAQCGF SPASLSQTAE AQAECLLQRS PVRGFHVEKR QGSLVMCWQR KELVTVSTWK  600
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2827460034375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.67060.0leaf| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00018011001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894450.0AC189445.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070L01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013728382.10.0scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A078IWW30.0A0A078IWW3_BRANA; BnaA07g37990D protein
STRINGBo6g074360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  4. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]