PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00018081001
Common NameGSBRNA2T00018081001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 208aa    MW: 23933.7 Da    PI: 10.7073
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00018081001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.76.7e-09172204338
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 
                          y+GV++++++grW A+I  +     +k  +lg+fg 
  GSBRNA2T00018081001 172 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFGN 204
                          9***************988532...5********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.02126135IPR001471AP2/ERF domain
SMARTSM003806.0E-486141IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-9102136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-8103135IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-6170204IPR016177DNA-binding domain
SMARTSM003800.029171207IPR001471AP2/ERF domain
PROSITE profilePS5103210.231171207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-5171204IPR001471AP2/ERF domain
PfamPF008472.0E-4172204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MIIIRFLSIT TVVITTVRES STITTERRQI LRRRSLLWQW KDQILLTRRS LIRLDKGLPF  60
TEELQDIDGR EGMKLIYGII AVGEKVRPGK DVKSLHLLRC FCLYLGGYDK EDKAARAYDL  120
AALKYWNTAA TTNFPITNYS KELEEMKHMT KQEFIASLRR KSSGFSRGAS MYRGVTRHHQ  180
QGRWQARIGR VAGNKDLYLG TFGNSNQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.152303e-43seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00018081001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9741971e-100AY974197.1 Arabidopsis thaliana clone At5g10510 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078K1C61e-151A0A078K1C6_BRANA; BnaCnng73930D protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.11e-64AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]