PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00018766001

Common Name

GSBRNA2T00018766001, LOC106409017

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C3H

Protein Properties

Length: 392aa MW: 42882.5 Da PI: 7.415

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00018766001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.7e-07	103	126	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C+ f+ +G C++Gd C FaHg GSBRNA2T00018766001 103 GEVCPEFRHGGDCSRGDECGFAHG 126 589********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	3.14E-5	99	130	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0042	100	127	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.732	101	128	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.9E-5	103	128	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.0E-5	104	126	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.3	136	159	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MDIEHHNSGH IGKPTVVIPS RKLLSSAKSP SSTSSPRRDG NDQKDYHYDS DSDDPYAGDH 60 FRMYEFKIRR CTRSRSHDWT DCPFSHPGEK ARRRDPRRYH YTGEVCPEFR HGGDCSRGDE 120 CGFAHGVFEC WLHPSRYRTE ACKDGKHCTR KICFFAHSPP QLRVPPPPES FVSGGGGSAL 180 SSPASVLSNK SNGCCVFCSN SPTSPLFGLA HSPSSSPPLS PANKVTAVSR LSRHRSAVTY 240 KEVLNEMINS LDSFSLTQPL TAASSASMAT MPVSTASMLA SSSLSNHYHH RLPPWLDVGD 300 RDLQFALSPS STPSYLNGQI QLQPPPPSFF SEEFTPRGGR VSDFTAAATA AAEARDKSSF 360 EIGSSGDLDL GWVNDLLHDQ CEWSEKLSDG K*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MDIEHHNSGH IGKPTVVIPS RKLLSSAKSP SSTSSPRRDG NDQKDYHYDS DSDDPYAGDH  60
FRMYEFKIRR CTRSRSHDWT DCPFSHPGEK ARRRDPRRYH YTGEVCPEFR HGGDCSRGDE  120
CGFAHGVFEC WLHPSRYRTE ACKDGKHCTR KICFFAHSPP QLRVPPPPES FVSGGGGSAL  180
SSPASVLSNK SNGCCVFCSN SPTSPLFGLA HSPSSSPPLS PANKVTAVSR LSRHRSAVTY  240
KEVLNEMINS LDSFSLTQPL TAASSASMAT MPVSTASMLA SSSLSNHYHH RLPPWLDVGD  300
RDLQFALSPS STPSYLNGQI QLQPPPPSFF SEEFTPRGGR VSDFTAAATA AAEARDKSSF  360
EIGSSGDLDL GWVNDLLHDQ CEWSEKLSDG K*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00018766001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013705157.1	0.0	zinc finger CCCH domain-containing protein 61
Swissprot	Q9FKW2	1e-172	C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBL	A0A078G744	0.0	A0A078G744_BRANA; BnaA06g36220D protein
STRING	Bra033731.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2987	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44260.1	1e-134	C3H family protein

Link Out ? help Back to Top
Entrez Gene	106409017

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]