PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00018816001

Common Name

GSBRNA2T00018816001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 239aa MW: 27575.4 Da PI: 10.0003

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00018816001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	2.9e-09	88	136	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+r h + Er RR++ ++++ L++llP K +K +i+ekAv+ I++L+ GSBRNA2T00018816001 88 RCRRHMMKERTRREKQKQSYLALQSLLPAT------KSDKNSIVEKAVDQIRKLE 136 6788***********************9......788888********995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-11	85	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.87E-9	86	140	No hit	No description
PROSITE profile	PS50888	10.626	87	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-8	88	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-6	88	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-7	93	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MDFFSLDSVF QEEGENFWDM IAGDVSGDGD GDKTVGVPNR SAFRSYVRDH EQRRVSSSST 60 VNVKRRMVNL LRKNWEEKKI VAVPGKERCR RHMMKERTRR EKQKQSYLAL QSLLPATKSD 120 KNSIVEKAVD QIRKLEGLKK ELERKMNVLE AKSARDHDEM NGKKVRFNVQ EPLSGIDSVV 180 EVLQCLKSMG TNLNTVQANF SPHEFSATMN IETQIRGEEV EKRVQKRLQE TEWKLLLF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00018816001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189402	0.0	AC189402.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057L05, complete sequence.
GenBank	AC189591	0.0	AC189591.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013D23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009101773.1	1e-176	PREDICTED: transcription factor bHLH92
Refseq	XP_022570422.1	1e-176	transcription factor bHLH92-like
Swissprot	Q9FIX5	1e-109	BH092_ARATH; Transcription factor bHLH92
TrEMBL	A0A078G773	1e-175	A0A078G773_BRANA; BnaA06g36620D protein
STRING	Bra033690.1-P	1e-141	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9602	25	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	1e-106	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]