PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00018836001
Common NameGSBRNA2T00018836001, LOC106349550
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 520aa    MW: 57605.6 Da    PI: 8.3849
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00018836001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.62.3e-40264339277
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          CqvegC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++
  GSBRNA2T00018836001 264 CQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 339
                          **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.8E-33257325IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.795261338IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.84E-38262342IPR004333Transcription factor, SBP-box
PfamPF031104.4E-31264337IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MNRPKKVEAG ERQFDPSPSP NLVLRFAHIT CFLSLSLLFS SPTLVLLSKC SVLCQAKNGS  60
FTPLTTRSFP NSLINRFWCF SVCMECNAKP SLQWEWDNLI SFGTSSAEIP KKQRPMDWEN  120
DGFDCTTFYS SSFATEAAYG GGSSGSDLAH AFSKSSKSTS ISSSSAEVRT YNFTSEAGES  180
VPPGELGSSE EFAMGIDASP SLELSFGSGD PVLGLKLGKR TYFEDFWEVE NAKGSALPVS  240
LASSSASPVK KSKTLSQKLQ TPHCQVEGCN LDLSSAKDYH RKHRICENHS KFPKVVVSGV  300
ERRFCQQCSR FHCLSEFDEK KRSCRRRLSD HNARRRKPNP GRTYDGKQQM DFVWNRFALI  360
HPRSEENFLW PNPKPVSSRG LLQEPAKTEM PNKLFTEHCG FGLLDPKTKT TRAELFSKDL  420
LEKVTISSSH MGASQDLDGA LSLLSNSTPW VSSNQPTRFS LNHHSTSNLQ PVVHGSVTQL  480
SSVSSYWQPD PPAAEGSTAL TRNGVGQFNE NYNLNQFYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-262643371184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319336KKRSCRRRLSDHNARRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.246034e-75leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00018836001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894130.0AC189413.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061E18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644998.10.0squamosa promoter-binding-like protein 2 isoform X1
SwissprotQ9S8400.0SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLA0A078GAD20.0A0A078GAD2_BRANA; BnaA06g36780D protein
STRINGBo7g065290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.30.0squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]