PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00018840001

Common Name

GSBRNA2T00018840001, LOC106352495

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YC

Protein Properties

Length: 131aa MW: 14755.1 Da PI: 10.7425

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00018840001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	50.5	4.5e-16	6	90	14	97
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 + + e+P++r+kki+k+d+d+++i +ea l++ + elf+ l+ +s l a e++r+t+ + av+r + + dfl+d p GSBRNA2T00018840001 6 ETTTRPEFPITRVKKIMKVDKDINKINSEALHLVTYSTELFLRFLADKSSLVAAEKRRKTVTLDHLRIAVKRHQpTRDFLLDSLP 90 4455779*************************************************************9976489***987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.54E-17	8	78	IPR009072	Histone-fold
Pfam	PF00808	6.7E-19	12	75	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.9E-19	13	90	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MAEEEETTTR PEFPITRVKK IMKVDKDINK INSEALHLVT YSTELFLRFL ADKSSLVAAE 60 KRRKTVTLDH LRIAVKRHQP TRDFLLDSLP LPSSQPVRVT KTASEKKPPP AGTRRIDAFF 120 SKGKAKVDSP *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.275	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00018840001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189413	0.0	AC189413.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061E18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013647572.1	7e-89	nuclear transcription factor Y subunit C-5
TrEMBL	A0A078GAF2	2e-87	A0A078GAF2_BRANA; BnaA06g36810D protein
TrEMBL	A0A3P5YMZ0	2e-87	A0A3P5YMZ0_BRACM; Uncharacterized protein
STRING	Bra033668.1-P	2e-79	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12860	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	1e-54	nuclear factor Y, subunit C13

Link Out ? help Back to Top
Entrez Gene	106352495

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]