PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00019007001

Common Name

GSBRNA2T00019007001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 408aa MW: 45608.1 Da PI: 9.2014

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00019007001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.8	1.4e-29	186	240	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r+rW+++LH+rFv+a +++GGs++AtPk+i++ mkv+gLt+++vkSHLQkYR++ GSBRNA2T00019007001 186 QRRRWSQDLHRRFVDAFRRIGGSQVATPKQIRDEMKVDGLTNDEVKSHLQKYRMH 240 8****************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.795	182	242	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-26	183	243	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.25E-15	183	243	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.0E-24	186	240	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-6	187	238	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MVQTDKDRRM SLNLNLSMYS IAKPLSQFLD EVSRIKDNHS KLSEIDVYVG KLEEERKKID 60 VFKRELPLCM LLLNEAIERL KEEASSVMMA SNGKLDVGQG SKLENDNKKN WMSSAQLWIS 120 NSNSTNKEED RRVTQTCNNL NQGGSFTPFN PPMINCSRTE QNHQFNSRTE QNHQFNKPHH 180 IPKKEQRRRW SQDLHRRFVD AFRRIGGSQV ATPKQIRDEM KVDGLTNDEV KSHLQKYRMH 240 IRKHPLSSSD QPRETQSLIS LSRSGSPQSP LVGRGLFNNN GSHISEDDEE EEKSDGRSWR 300 VSVEENRGGG DVVEDDGVSG VDVVIHGPAD GVCAFFGEVI ATPILRRAPA VGVGVVRGYS 360 PRSSLSQARA EVSAMKSSSS GASFLSACGR HAQLHRRVGG QTMAVLT*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MVQTDKDRRM SLNLNLSMYS IAKPLSQFLD EVSRIKDNHS KLSEIDVYVG KLEEERKKID  60
VFKRELPLCM LLLNEAIERL KEEASSVMMA SNGKLDVGQG SKLENDNKKN WMSSAQLWIS  120
NSNSTNKEED RRVTQTCNNL NQGGSFTPFN PPMINCSRTE QNHQFNSRTE QNHQFNKPHH  180
IPKKEQRRRW SQDLHRRFVD AFRRIGGSQV ATPKQIRDEM KVDGLTNDEV KSHLQKYRMH  240
IRKHPLSSSD QPRETQSLIS LSRSGSPQSP LVGRGLFNNN GSHISEDDEE EEKSDGRSWR  300
VSVEENRGGG DVVEDDGVSG VDVVIHGPAD GVCAFFGEVI ATPILRRAPA VGVGVVRGYS  360
PRSSLSQARA EVSAMKSSSS GASFLSACGR HAQLHRRVGG QTMAVLT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	187	PKKEQRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, inflorescence apex, floral primordia, stamen primordia, carpel primordia and ovules. {ECO:0000269\|PubMed:26903506}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00019007001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ973839	1e-119	DQ973839.1 Brassica napus clone PBCESTNA15 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013681463.1	0.0	transcription factor HHO5-like
Swissprot	F4JRB0	1e-130	HHO5_ARATH; Transcription factor HHO5
TrEMBL	A0A078GAQ5	0.0	A0A078GAQ5_BRANA; BnaC03g61720D protein
STRING	Bo3g153770.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4922	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	1e-134	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]