PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00019074001

Common Name

GSBRNA2T00019074001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 244aa MW: 27124.9 Da PI: 8.2305

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00019074001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32	2.2e-10	60	106	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riNs + +Lr +l + K +Ka+ L k+v+ +k+L GSBRNA2T00019074001 60 RNHKEAERRRRERINSHLTKLRNVLSCN-----SKTDKATLLAKVVHRVKEL 106 58*********************997.....7**********999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.157	57	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-8	60	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-11	60	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-12	60	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-9	63	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MQPESSDQML YSFLTGNQIS GGGFCVSENY KSSSTSSYYP LAISGIGETL AQDRAIAALR 60 NHKEAERRRR ERINSHLTKL RNVLSCNSKT DKATLLAKVV HRVKELKQQT LEISDSDQTL 120 LPSETDEISV LHYGDYSNDG HIIFKASLCC DDRSDLLPDL MEILNSLHMK TLRAEMVTLG 180 GRTRNVLVVA ADKEMHGVQS VHFLQNALKS LLERSSKLLM ECSSGSGGER SKRRRALEHV 240 IMV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	70	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00019074001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119059	0.0	AK119059.1 Arabidopsis thaliana At2g41130 mRNA for putative bHLH transcription factor (bHLH106), complete cds, clone: RAFL21-40-D23.
GenBank	AY074639	0.0	AY074639.1 Arabidopsis thaliana At2g41130/T3K9.10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013626524.1	1e-178	PREDICTED: transcription factor bHLH106-like
Swissprot	O80674	1e-134	BH106_ARATH; Transcription factor bHLH106
TrEMBL	A0A078GAU9	1e-178	A0A078GAU9_BRANA; BnaC03g23140D protein
TrEMBL	A0A3P6ALQ7	1e-178	A0A3P6ALQ7_BRAOL; Uncharacterized protein
STRING	Bo3g035410.1	1e-177	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3642	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	1e-116	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]