PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019126001
Common NameGSBRNA2T00019126001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 227aa    MW: 26435.6 Da    PI: 6.2402
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019126001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.32.9e-34411322102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+y+++ed++++e+isw+ +g+ f+v+++ efa+++Lp+ Fkh nf+SFvRQLn+YgF+kv++++         weF ++ F+kg++
  GSBRNA2T00019126001  41 FLVKTYKVVEDPTTDEVISWNGDGTGFIVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVSTTR---------WEFGNEMFRKGQR 121
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          el+++i+r+ks
  GSBRNA2T00019126001 122 ELMCNIRRRKS 132
                          *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3631125IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.33E-3237130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5437130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-184164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3041130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-187991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-1892104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEDDHLRCHD NINDEERLPL EFMTGKQTST AELQPSQRPP FLVKTYKVVE DPTTDEVISW  60
NGDGTGFIVW QPAEFARDLL PTLFKHCNFS SFVRQLNTYG FRKVSTTRWE FGNEMFRKGQ  120
RELMCNIRRR KSYPHSHSHN KSHQVVPTTT TENLEDHHLQ DQRSSSVVYS ALLDENKCLK  180
NENEFLSSEL GKTKKKCKQL MELVERYRGE EDDDETTTIR GLSCLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-223513014120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00019126001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013647895.11e-164heat stress transcription factor B-3-like
SwissprotO222301e-118HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A078G7W21e-169A0A078G7W2_BRANA; BnaC03g23450D protein
STRINGBo3g035750.11e-159(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-120heat shock transcription factor B3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]