PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019128001
Common NameGSBRNA2T00019128001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 429aa    MW: 46989.4 Da    PI: 9.0541
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019128001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-1766125155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  GSBRNA2T00019128001  66 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 125
                          57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-1366125IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-1766134IPR016177DNA-binding domain
PROSITE profilePS5103220.12667133IPR001471AP2/ERF domain
SMARTSM003803.8E-2667139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1567134IPR001471AP2/ERF domain
PRINTSPR003674.3E-56879IPR001471AP2/ERF domain
PRINTSPR003674.3E-5115135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MASMSSPDQG PKTEAGGGGG ESSENVSASD QMLLYRSFKK AKKERGCTAK ERISKMPPCT  60
AGKRSSIYRG VTRHRWTGRY EAHLWDKSTW NQNQNKKGKQ VYLGAYDDEE AAARAYDLAA  120
LKYWGPGTLI NFPVTDYSRD LEEMQSLSRE EYLATLRRKS SGFSRGIAKY RGLQSRWEAS  180
ASRMPGPEYF GNLHYGDERG AEGDFLGSFC LERKIDLTGY VKWWGVNKPR QPESSSKASE  240
DAKVEDAGTE LKTLEHASQA TEPYKAPNFG VHHGTQRKGK QITSPSSTSS ALSILSASPA  300
YKSLEEKVMK IQESSSTREN DENANRNINS TEKSHGKEIE KPPVVSHGVS LGSGGGVAPA  360
AAALSLQKSM YPLASLLTAP LLSNYNTLDP LGEPILWTPF LPPGSSHTLE VTKTETSCST  420
YSYLPQEK*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00019128001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535340.0AK353534.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-D01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013650902.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A078GBY00.0A0A078GBY0_BRANA; BnaC03g23470D protein
STRINGBo3g035770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.10.0AP2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]