PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00019164001

Common Name

GSBRNA2T00019164001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 269aa MW: 30652 Da PI: 7.3268

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00019164001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.5	9.3e-11	142	185	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L + GSBRNA2T00019164001 142 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQSEVSVLSPR 185 8999********************************98777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.6E-13	138	202	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.657	140	192	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.18E-11	142	196	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-11	142	193	No hit	No description
Pfam	PF00170	5.7E-9	142	186	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.11E-21	143	193	No hit	No description
PROSITE pattern	PS00036	0	145	160	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MAQLPPQIPN MTPHWPDFSQ KLSHFSTAAA SSAFLDFSAC SRGNHRRSIS DSIAFLEAPI 60 VTSHMEEHNF DKFDDEQFMS MFTEDDDDLR NNRSHNNKNV GPNNNNNRND EVRSQCKTEP 120 EDGTASSNNS GDSSSNRIID PKRVKRILAN RQSAQRSRVR KLQYISELER SVTSLQSEVS 180 VLSPRVAFLD HQRLLLNVDN SALKQRIAAL AQDKIFKDAH QESLKREIER LRQVYQQQSF 240 KKMENANHSP ETGVDIKLSI EKEQMLNI*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in vascular tissues of leaves, stems and siliques, anthers, filaments, tapetum, mature pollen grains, pistil vascular tissues and papillar cells, and funiculi. {ECO:0000269\|PubMed:19449183}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269\|PubMed:17719007, ECO:0000269\|PubMed:19449183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00019164001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074657	1e-146	AY074657.1 Arabidopsis thaliana At2g42380/MHK10.10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013683759.1	1e-179	basic leucine zipper 34-like
Swissprot	F4IN23	1e-134	BZP34_ARATH; Basic leucine zipper 34
TrEMBL	A0A078GB35	0.0	A0A078GB35_BRANA; BnaC03g23710D protein
STRING	XP_006294608.1	1e-139	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1753	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	1e-115	bZIP family protein

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]