PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019237001
Common NameGSBRNA2T00019237001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 384aa    MW: 40836.6 Da    PI: 6.3245
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019237001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_165.68.5e-21276337162
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                          e+elkr+rrk++NRe+ArrsR+RK+ae++eL++++++L +eN +L+ e+++l+ ++++  +e
  GSBRNA2T00019237001 276 ERELKRQRRKESNRESARRSRLRKQAECDELAQRADVLNGENASLRAEINKLRSQYEEFVAE 337
                          89******************************************************987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.0E-29199IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.3E-33138254No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-17268334No hitNo description
PfamPF001704.7E-19276334IPR004827Basic-leucine zipper domain
SMARTSM003382.8E-21276340IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.714278341IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.31E-11279334No hitNo description
CDDcd147021.25E-23281331No hitNo description
PROSITE patternPS000360283298IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGSSEVDKSG EENEPKTPPP PSSAPVTSQE PSSAVATPDW SGFQAYSPMP PPHGYVASSP  60
QPHPYMWGVQ HMMPPYGTPP HPYVAMYPPG GLYAHPSLPP GSYPYSPYTM PSPNGMAEAS  120
GNTGSGVEGD GKQAEAKEKL PIKRSKGSLG SLNMIIGKKN EAGKNSGASA NGACSKRHSG  180
SDGTSEGSDA NSQNDSGSRH NGKDGETASD SAQGPPRNGS NQPVNQIVPV TPVSATGVPA  240
PQTNLNMGMD YWSGHGTTVP GVVVDGSQSQ TWVQDERELK RQRRKESNRE SARRSRLRKQ  300
AECDELAQRA DVLNGENASL RAEINKLRSQ YEEFVAENSA LKNRFSTVRS LEGVNLDVKE  360
QEPETSTRQD VAETTRGSYN NSA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292298RRSRLRK
2292299RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.222280.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00173DAPTransfer from AT1G32150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00019237001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535050.0AK353505.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-47-I14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013733830.10.0bZIP transcription factor 68-like
SwissprotQ84LG20.0BZP68_ARATH; bZIP transcription factor 68
TrEMBLA0A078GB740.0A0A078GB74_BRANA; BnaC05g24270D protein
STRINGBo5g048660.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.11e-177basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]