PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00019258001

Common Name

GSBRNA2T00019258001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 136aa MW: 15038.2 Da PI: 10.1391

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00019258001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	32.9	1.9e-10	89	131	51	93
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 + +ekewyfFs++++ky+t ++ra+ +gyW+ tg k+v GSBRNA2T00019258001 89 YLYREKEWYFFSPKERKYQTILIQTRAAGAGYWNVTGAYKPVG 131 233789********************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	11.44	26	135	IPR003441	NAC domain
SuperFamily	SSF101941	7.32E-11	88	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MSTRRRSRFC KSTRIRSICG VRGSDRIHSK DFSDALTEVL REDTCLPQAA GGNVGSISCE 60 SVVPAGVASM KPTNPTGCDG RDCLSKKMYL YREKEWYFFS PKERKYQTIL IQTRAAGAGY 120 WNVTGAYKPV GKPKT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00019258001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A078GB83	4e-96	A0A078GB83_BRANA; BnaC05g24370D protein
STRING	Bo5g048860.1	1e-90	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08790.1	3e-16	NAC family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]