PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019342001
Common NameGSBRNA2T00019342001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 200aa    MW: 22520.9 Da    PI: 10.3744
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019342001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.55.1e-53171441128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelvv+yLk kv++ +l++  +i evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk
  GSBRNA2T00019342001  17 LPPGFRFHPTDEELVVHYLKSKVASAPLPV-AIIGEVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDK 105
                          79****************************.88***************999999************************************ PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           vl++ ++ +vg+kk Lvfy+g+ pkg+k+dW+mheyrl
  GSBRNA2T00019342001 106 LVLASdGKLKVGVKKALVFYSGKPPKGVKSDWIMHEYRL 144
                          ***9955667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-6513179IPR003441NAC domain
PROSITE profilePS5100561.09717178IPR003441NAC domain
PfamPF023652.2E-2818144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEITDSPGGS PPPQPNLPPG FRFHPTDEEL VVHYLKSKVA SAPLPVAIIG EVDLYKFDPW  60
ELPAKASFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKLVLAS DGKLKVGVKK  120
ALVFYSGKPP KGVKSDWIMH EYRLIDNKPN NRPPGCVFGN KRNSLRLDDW VLCRIYKKNN  180
ASRHKKSSLV IKWTPSQRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-731118311170NO APICAL MERISTEM PROTEIN
1ut4_B5e-731118311170NO APICAL MERISTEM PROTEIN
1ut7_A5e-731118311170NO APICAL MERISTEM PROTEIN
1ut7_B5e-731118311170NO APICAL MERISTEM PROTEIN
3swm_A6e-731118314173NAC domain-containing protein 19
3swm_B6e-731118314173NAC domain-containing protein 19
3swm_C6e-731118314173NAC domain-containing protein 19
3swm_D6e-731118314173NAC domain-containing protein 19
3swp_A6e-731118314173NAC domain-containing protein 19
3swp_B6e-731118314173NAC domain-containing protein 19
3swp_C6e-731118314173NAC domain-containing protein 19
3swp_D6e-731118314173NAC domain-containing protein 19
4dul_A5e-731118311170NAC domain-containing protein 19
4dul_B5e-731118311170NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}.
UniprotTISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00019342001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532261e-171AK353226.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-33-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626443.11e-131PREDICTED: NAC transcription factor 56-like
RefseqXP_022568598.11e-132NAC transcription factor 56-like
SwissprotQ9LD441e-112NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A078GBD01e-144A0A078GBD0_BRANA; BnaC08g43050D protein
STRINGBo3g066880.11e-131(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-107NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]