PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019501001
Common NameGSBRNA2T00019501001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 85aa    MW: 9122.09 Da    PI: 6.9249
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019501001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.5e-091171026
                         GGTS--TTTTT-SS-SS CS
              zf-CCCH 10 artGtCkyGdrCkFaHg 26
                         +++G+CkyG++CkF H+
  GSBRNA2T00019501001  1 MAYGFCKYGASCKFDHP 17
                         789*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006428.5E-7117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.169119IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MAYGFCKYGA SCKFDHPVPV NPYHYAGLTM PSLPTAYAPP VSTQVRITSP PSLTDSTTVS  60
NGDKSTAENK SSETEKQDDC RTHH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00019501001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136032.12e-42PREDICTED: zinc finger CCCH domain-containing protein 26-like
SwissprotO487721e-26C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLA0A078IX371e-55A0A078IX37_BRANA; BnaCnng30220D protein
STRINGBo3g069090.17e-51(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.16e-29zinc finger nuclease 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]