PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019503001
Common NameGSBRNA2T00019503001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 162aa    MW: 16691.8 Da    PI: 7.395
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019503001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.58.2e-12225326
                         S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                         ++ C +f ++G+CkyG+rCkF H+
  GSBRNA2T00019503001  2 QPACGNFKAYGFCKYGARCKFDHP 25
                         689********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0084126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216127IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-9225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-5524IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
GQPACGNFKA YGFCKYGARC KFDHPVPIRV WICACSLPPS IPCVPVSICG AASSDCSSSV  60
ACGWVGIMVW ICACSPPSLL PCPSSIPSVS VSICGAASSG CISSTNTHIS CSNQTSENEK  120
EDDGTRQKCK NTSSEAKKGG KDPSAADNSR ERDTSDNAAW S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00019503001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078J0G01e-110A0A078J0G0_BRANA; BnaCnng30240D protein (Fragment)
STRINGBo3g070110.13e-46(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.14e-12zinc finger nuclease 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]