PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00019548001

Common Name

GSBRNA2T00019548001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 231aa MW: 26584.7 Da PI: 10.2427

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00019548001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	8e-16	6	51	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed+ l ++v+q+G+++W+ Ia+++ gR++k+c++rw++ GSBRNA2T00019548001 6 RGHWRPIEDDHLRQLVEQYGPKNWNFIAQHLY-GRSGKSCRLRWYNQ 51 899**************************9.**********96 PP
2	Myb_DNA-binding	53.5	5.7e-17	58	100	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++T+eE+e+l++a++ G++ W++Iar ++ gRt++ +k++++ GSBRNA2T00019548001 58 KKPFTEEEEERLLQAHRFQGNR-WASIARLFP-GRTDNAVKNHFH 100 689*****************.*****.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.005	1	56	IPR017930	Myb domain
SuperFamily	SSF46689	8.99E-29	4	99	IPR009057	Homeodomain-like
SMART	SM00717	6.0E-13	5	54	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-25	7	59	IPR009057	Homeodomain-like
Pfam	PF13921	1.5E-16	9	69	No hit	No description
CDD	cd00167	5.53E-12	9	50	No hit	No description
SMART	SM00717	6.6E-14	57	105	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.134	57	107	IPR017930	Myb domain
CDD	cd00167	1.84E-10	60	100	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-19	60	105	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
SVSCQRGHWR PIEDDHLRQL VEQYGPKNWN FIAQHLYGRS GKSCRLRWYN QLDPNITKKP 60 FTEEEEERLL QAHRFQGNRW ASIARLFPGR TDNAVKNHFH VIIARRKRES SSSTATSTFN 120 QSWHNIFSHS SSLTRLDRSQ FGLWTYQKDK SRGLWPYTFV PAPKDGQFGS SSISNLHKDI 180 YPERIKSKEL VDHTPDHKKN SISEDGPSMG DNGGKKNVTF IDFLGVGLLS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-34	6	106	7	107	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00019548001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009108800.1	1e-162	PREDICTED: transcriptional activator Myb-like
TrEMBL	A0A078JVV6	1e-171	A0A078JVV6_BRANA; BnaAnng38560D protein (Fragment)
STRING	Bra034565.1-P	1e-162	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10133	20	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33450.1	1e-140	myb domain protein 69

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]