PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019578001
Common NameGSBRNA2T00019578001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 328aa    MW: 36121.4 Da    PI: 7.1623
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019578001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.99.5e-54171441128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelvv+yLk+k+++ +l++ ++i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk
  GSBRNA2T00019578001  17 LPPGFRFHPTDEELVVHYLKRKAASAPLPV-SIIADVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDK 105
                          79****************************.89***************999999************************************ PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +vl++ ++++vg+kk Lvfy+g+ pkg+k+dW+mheyrl
  GSBRNA2T00019578001 106 PVLASdGNQKVGVKKALVFYSGKPPKGVKSDWIMHEYRL 144
                          ***9967788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6512179IPR003441NAC domain
PROSITE profilePS5100562.32117178IPR003441NAC domain
PfamPF023655.7E-2818144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MESTDSSGGP PPPQPNLPPG FRFHPTDEEL VVHYLKRKAA SAPLPVSIIA DVDLYKFDPW  60
ELPAKASFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPVLAS DGNQKVGVKK  120
ALVFYSGKPP KGVKSDWIMH EYRLIDNKPN NRPPGCDYGN KKNSLRLDDW VLCRIYKKNN  180
AGRHVDNDKD HDMIDYIFRK IPSGLNHSVS RSMNFFPGRF SGGYGMFSDG DPGFYDGSGM  240
MCSNGADAVN LNVCNGNLIA DVVADEEQEV SPSKRFHGVG GGGDCSNMSS SMVEEPPPFM  300
QQQGGVLGDG LFRTTSYQLP GLNWYSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-731118311170NO APICAL MERISTEM PROTEIN
1ut4_B1e-731118311170NO APICAL MERISTEM PROTEIN
1ut7_A1e-731118311170NO APICAL MERISTEM PROTEIN
1ut7_B1e-731118311170NO APICAL MERISTEM PROTEIN
3swm_A1e-731118314173NAC domain-containing protein 19
3swm_B1e-731118314173NAC domain-containing protein 19
3swm_C1e-731118314173NAC domain-containing protein 19
3swm_D1e-731118314173NAC domain-containing protein 19
3swp_A1e-731118314173NAC domain-containing protein 19
3swp_B1e-731118314173NAC domain-containing protein 19
3swp_C1e-731118314173NAC domain-containing protein 19
3swp_D1e-731118314173NAC domain-containing protein 19
4dul_A1e-731118311170NAC domain-containing protein 19
4dul_B1e-731118311170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.137530.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}.
UniprotTISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00019578001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747610.0KF974761.1 Brassica napus NAC transcription factor 56-1 (NAC56-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302865.10.0NAC transcription factor 56-like
SwissprotQ9LD440.0NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A078J2L80.0A0A078J2L8_BRANA; BnaCnng30350D protein
STRINGBo1g128420.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.10.0NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]