PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019640001
Common NameGSBRNA2T00019640001, LOC106377242
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 189aa    MW: 21677.1 Da    PI: 4.7915
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019640001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.72.9e-3331181128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdLp k+ +e ++wyf+s++         ++r+t++gyW +   d+
  GSBRNA2T00019640001   3 LPPGFRFFPTDEELVVHFLQRKASLLPCHP-DVIPDLDLYPYDPWDLPGKALGEGRQWYFYSRKT--------QQRVTSNGYWGSMEIDE 83 
                          79*************************999.99***************87778899*****9974........4799************* PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ ++++vg+kk ++fy g+    +kt+W+m+ey+l
  GSBRNA2T00019640001  84 PIFTSsTHKKVGIKKYFTFYLGN----SKTNWIMQEYSL 118
                          **99867888**********654....489*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-431156IPR003441NAC domain
PROSITE profilePS5100540.4643156IPR003441NAC domain
PfamPF023655.4E-224118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MNLPPGFRFF PTDEELVVHF LQRKASLLPC HPDVIPDLDL YPYDPWDLPG KALGEGRQWY  60
FYSRKTQQRV TSNGYWGSME IDEPIFTSST HKKVGIKKYF TFYLGNSKTN WIMQEYSLPD  120
SSSSSKRSSK RSGRGSTSSS HKTDYSKWVI CRVYEQNCSE EEDDDGPELS CLDEVFLSLD  180
DLDEVSLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-35116215171NO APICAL MERISTEM PROTEIN
1ut4_B5e-35116215171NO APICAL MERISTEM PROTEIN
1ut7_A5e-35116215171NO APICAL MERISTEM PROTEIN
1ut7_B5e-35116215171NO APICAL MERISTEM PROTEIN
3swm_A6e-35116218174NAC domain-containing protein 19
3swm_B6e-35116218174NAC domain-containing protein 19
3swm_C6e-35116218174NAC domain-containing protein 19
3swm_D6e-35116218174NAC domain-containing protein 19
3swp_A6e-35116218174NAC domain-containing protein 19
3swp_B6e-35116218174NAC domain-containing protein 19
3swp_C6e-35116218174NAC domain-containing protein 19
3swp_D6e-35116218174NAC domain-containing protein 19
4dul_A5e-35116215171NAC domain-containing protein 19
4dul_B5e-35116215171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.245292e-68leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00019640001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667460.0KC966746.1 Brassica napus NAC transcription factor 104 (NAC104.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626261.11e-138PREDICTED: NAC transcription factor NAM-B2
RefseqXP_013672896.11e-138NAC domain-containing protein 104
SwissprotQ8GWK61e-113NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A078J0K31e-137A0A078J0K3_BRANA; BnaCnng30500D protein
TrEMBLA0A0D3BF321e-136A0A0D3BF32_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BBK01e-136A0A3P6BBK0_BRAOL; Uncharacterized protein (Fragment)
STRINGBo3g101220.11e-137(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-96xylem NAC domain 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  3. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]