PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00019704001

Common Name

GSBRNA2T00019704001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 234aa MW: 26269.8 Da PI: 5.007

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00019704001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	35.5	1.2e-11	22	56	13	47
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgkly 47 + R +++lKKA+ELS LC+++v++i + +g+l+ GSBRNA2T00019704001 22 YNARAATVLKKAFELSELCGVDVCIIWYDREGNLK 56 66799**************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	7.72E-8	20	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.2E-8	22	55	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	8.662	22	62	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MKMNKLLVRK DTVFKIASSA LYNARAATVL KKAFELSELC GVDVCIIWYD REGNLKKRER 60 KETTSQELED SLQSCLQTLK ESLHLDQPQD LSSNDSSLIN VYHHQASSLL SYPSSSSENC 120 VDDVSTTTTT MNHPQSKFSI LLFNHENGAL TQLANPSALP SFEQQPQIQC NQNYGTNYMD 180 LLLGEQGCNN VDLLMPTLFP PPMMMQTQTP NFQQFMQTQP VYNQIPVFGT MLS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00019704001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105602.1	1e-145	PREDICTED: agamous-like MADS-box protein AGL53
Refseq	XP_013650696.1	1e-145	agamous-like MADS-box protein AGL53
TrEMBL	A0A078IXC3	1e-172	A0A078IXC3_BRANA; BnaA07g38630D protein
STRING	Bra004071.1-P	1e-144	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15639	7	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27070.1	3e-14	AGAMOUS-like 53

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]