PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00020137001
Common NameGSBRNA2T00020137001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 642aa    MW: 72979.3 Da    PI: 8.6516
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00020137001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07462504140
                          TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                          +++W++eE + l ++  ++++g   +W+ I++++g+gR+ +++
  GSBRNA2T00020137001 462 KQPWSKEEIDMLRKGMIKYPKGtsrRWEVISEYIGTGRSVEEI 504
                          79************************************99876 PP
2Myb_DNA-binding24.28e-08585628445
                          S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                          W++  +  lv+a k ++++   +W+++a+ ++ g+t  qck ++ 
  GSBRNA2T00020137001 585 WSAVQERALVQALKTFPKEtsqRWERVAAAVP-GKTVIQCKKKFA 628
                          ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.7E-2196200IPR001623DnaJ domain
SuperFamilySSF465652.62E-2198178IPR001623DnaJ domain
SMARTSM002711.0E-1999174IPR001623DnaJ domain
PfamPF002262.0E-17100179IPR001623DnaJ domain
CDDcd062577.14E-13100171IPR001623DnaJ domain
PROSITE profilePS5007618.501100182IPR001623DnaJ domain
PRINTSPR006255.8E-9105123IPR001623DnaJ domain
PRINTSPR006255.8E-9123138IPR001623DnaJ domain
PRINTSPR006255.8E-9154174IPR001623DnaJ domain
PROSITE patternPS006360159178IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.284457512IPR017877Myb-like domain
SuperFamilySSF466891.35E-7458505IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-5461504IPR009057Homeodomain-like
SMARTSM007179.3E-7461514IPR001005SANT/Myb domain
PfamPF002493.8E-6462504IPR001005SANT/Myb domain
CDDcd001672.09E-4464504No hitNo description
Gene3DG3DSA:1.10.10.607.9E-5580629IPR009057Homeodomain-like
PROSITE profilePS512938.817580635IPR017884SANT domain
SuperFamilySSF466898.97E-9581630IPR009057Homeodomain-like
SMARTSM007176.3E-8581633IPR001005SANT/Myb domain
PfamPF002495.6E-6585629IPR001005SANT/Myb domain
CDDcd001678.41E-6585631No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MPSLRSDSSI KLITYSEELV DGKPLYASSN SLPVKALNRE PAGHAFHSAA LKLHGCAEEP  60
TDSEGDDKKA GGDDKEKEYV PSFNSYSNKG KKKSGTQQQD HYALLGLSNL RYLATEDQIR  120
KSYREAALKH HPDKLASLLL TEETEEAKEA KKEEIESRFK AIQEAYEVLM DPLKRRIFDS  180
TDEFDDEVPT DCAPQDFFKV FGPAFKRNAR WSVNQRIPDL GEENTKLKEV DRFYNFWYAF  240
KSWREFPDEE EHDLEQADSR EERRWMEKEN ARATAKARKE EHARIRTLVD NAYRKDPRIV  300
KRKEEEKAEK QQKKDAKLMA KKKQEEEAAI AAAEEKRRKE EEEKRAVESA QQQKKAKEKE  360
KKLIRKERNR LRTLSAPVVA QRLLDISQED IENLCMTLNI EQLQSLCDKM GNKEGLELAK  420
VIRDGCSDSS RDQEANSKEK ESEKTNGGGA ERVSVLESTQ KKQPWSKEEI DMLRKGMIKY  480
PKGTSRRWEV ISEYIGTGRS VEEILKATKT VLLQKPDSAK AFDSFLEKRK PTATIASPLS  540
TREELGESLP ATAKVKPPVK ETVVVGQSSE SNGEASGSSV ETDGWSAVQE RALVQALKTF  600
PKETSQRWER VAAAVPGKTV IQCKKKFAEL KEIIRSKKTA V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1519629920123Zuotin
5dje_B1e-1519629920123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320338KKKQEEEAAIAAAEEKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.141770.0root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00020137001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895470.0AC189547.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022559191.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A078J3970.0A0A078J397_BRANA; BnaCnng31270D protein
TrEMBLA0A3P6FBG30.0A0A3P6FBG3_BRAOL; Uncharacterized protein
STRINGBo5g136560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]