PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00020213001
Common NameGSBRNA2T00020213001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 492aa    MW: 54792.7 Da    PI: 5.5476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00020213001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.2e-14334380455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YIk+Lq
  GSBRNA2T00020213001 334 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYIKELQ 380
                          799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.7E-5150231IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.536330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-18333393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-15333384No hitNo description
PfamPF000102.8E-11334380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-17334392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-17336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MNTSDVVGWE DEDTRSMASA VLGNSASDFL TANSNSNQNL FLVMGTDDGL NEKLSRLVDS  60
PNPESFSWNY AVFWQQTVSR SGQQVLAWGD GCCREPKEEE SMAYNLEEEM RWQYMRKRVL  120
QKLHRMFGGS DEDDYALNLE NVTATEMFFL ASMYFFFNHG EGGPGRCFAS GRHVWLSDAV  180
GSDYCFRSFM VKSAGIRTVV MVPTDAGVLE LGSVWSLPEN VELVRSVQGL FARRVKPPNM  240
SGGKIHKLFG QELNSSHHNN NGSTIGYTSQ EIDVKVQENV NVVVVDDKNH KVMKTSCNEK  300
RPASLLPEGV SVVEEKRPRK RGRKPANGRE EALNHVEAER QRREKLNQRF YALRAVVPNI  360
SKMDKASLLG DAISYIKELQ ERVKIIEAEA SQEVVDVQAG EEEVVVRVVS PLESHPASRI  420
IQAMRNSEVV SVMESKLSLA EETLFHTFVV KNNNGSDPLT KEKVIAAAYP QTGLTQQLLL  480
PSSSSQVSGD I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-27328392266Transcription factor MYC2
5gnj_B8e-27328392266Transcription factor MYC2
5gnj_E8e-27328392266Transcription factor MYC2
5gnj_F8e-27328392266Transcription factor MYC2
5gnj_G8e-27328392266Transcription factor MYC2
5gnj_I8e-27328392266Transcription factor MYC2
5gnj_M8e-27328392266Transcription factor MYC2
5gnj_N8e-27328392266Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315323KRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.292131e-147seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In seedlings, mainly expressed in root tips, cotyledons, hypocotyls, and leaves, as well as its guard cells. In adult plant, detectable in stems, flowers, and siliques. {ECO:0000269|PubMed:17828375}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00020213001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637084.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like isoform X1
SwissprotQ9ZPY80.0AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLA0A078J3A80.0A0A078J3A8_BRANA; BnaC04g52120D protein
STRINGBo4g008180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.10.0ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  6. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]