PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00020545001

Common Name

GSBRNA2T00020545001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 435aa MW: 49284.6 Da PI: 4.5068

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00020545001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.4	1.9e-11	229	273	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR ++N+++e L+ l+P++ K + a+iL+ ++YI++Lq GSBRNA2T00020545001 229 FTTERERRCHLNERYEALKLLIPNP-----SKGDRASILQDGIDYINELQ 273 578*******************9.....79***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.40E-12	221	277	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.4E-12	221	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.16E-14	223	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.056	223	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-9	227	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.7E-10	229	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MYEDSSCFDP NPTLEATVDN NGGYYDSTTA TEIDFTVRQQ FQPLVMIAGS TTNTFSDDLK 60 LPTMDEFSVF PSVVSSETQN QISNDNNHLI QQMIHDSNWA ASVDNYGFFM NPSDQNTTIT 120 PTPDLLSLLH LPKSSVPLPS SNLSDIMSGS CISYDPLFHL NLPPQPPVIL TADDYSGFFL 180 GTDTNITNTQ RDQQNLGDEN NNDQFDSGII EFSKNIRRKR RGKQKNKPFT TERERRCHLN 240 ERYEALKLLI PNPSKGDRAS ILQDGIDYIN ELQRRVSELK YLVERKRYNS NNNNLDDLNI 300 VNDEDDEDDD DENMDKKTES DVIDQCSSNN SLRCSWLQRK SKVTEVDVRI VDDEVTIKVI 360 QKRKINCLLV VTKVLDHLHL DLHHVSGGQI GEHYSFLLNT KINEGSTIYA SAIANKVIEV 420 VDQHYMAALP INNY*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MYEDSSCFDP NPTLEATVDN NGGYYDSTTA TEIDFTVRQQ FQPLVMIAGS TTNTFSDDLK  60
LPTMDEFSVF PSVVSSETQN QISNDNNHLI QQMIHDSNWA ASVDNYGFFM NPSDQNTTIT  120
PTPDLLSLLH LPKSSVPLPS SNLSDIMSGS CISYDPLFHL NLPPQPPVIL TADDYSGFFL  180
GTDTNITNTQ RDQQNLGDEN NNDQFDSGII EFSKNIRRKR RGKQKNKPFT TERERRCHLN  240
ERYEALKLLI PNPSKGDRAS ILQDGIDYIN ELQRRVSELK YLVERKRYNS NNNNLDDLNI  300
VNDEDDEDDD DENMDKKTES DVIDQCSSNN SLRCSWLQRK SKVTEVDVRI VDDEVTIKVI  360
QKRKINCLLV VTKVLDHLHL DLHHVSGGQI GEHYSFLLNT KINEGSTIYA SAIANKVIEV  420
VDQHYMAALP INNY*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00020545001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ519809	1e-125	AJ519809.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor.
GenBank	AK118441	1e-125	AK118441.1 Arabidopsis thaliana At2g31210 mRNA for putative bHLH transcription factor (bHLH091), complete cds, clone: RAFL19-68-P06.
GenBank	BT009675	1e-125	BT009675.1 Arabidopsis thaliana At2g31210 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141140.1	0.0	PREDICTED: transcription factor bHLH91-like
Swissprot	Q8GX46	0.0	BH091_ARATH; Transcription factor bHLH91
TrEMBL	A0A078J1S7	0.0	A0A078J1S7_BRANA; BnaA04g28790D protein
STRING	Bra021710.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]