PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00020640001
Common NameGSBRNA2T00020640001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 135aa    MW: 14603.5 Da    PI: 4.6136
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00020640001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26033.89.6e-11649241
               DUF260  2 CaaCkvlrrkCa....kdCvlapyfpaeqpkkfanvhklFGasn 41
                         CaaC ++   C+    + C++apyfp+++p+kf  v+k+FG+ n
  GSBRNA2T00020640001  6 CAACEFMTGPCTfgngNACIMAPYFPSTEPAKFDRVNKVFGVVN 49
                         ***********8555567***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.8E-8649IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MVMAICAACE FMTGPCTFGN GNACIMAPYF PSTEPAKFDR VNKVFGVVNA RIHDPIHGYL  60
GPQMNLFLFS LTNEMLELNE DQKNQLRGLP DVDARRNVDE IVGMRENNQG DVLRADGAST  120
SSGPSSAPPN QNQP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00020640001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597302.12e-57PREDICTED: LOB domain-containing protein 35-like
TrEMBLA0A078JYS64e-95A0A078JYS6_BRANA; BnaAnng38890D protein
STRINGBra019364.1-P3e-73(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.11e-10LOB domain-containing protein 25
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]