PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00020650001

Common Name

GSBRNA2T00020650001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 253aa MW: 28358.6 Da PI: 7.8591

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00020650001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.9	4.3e-28	121	181	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqKe+ gs+fpr+YYrCt++ +Cp+kk+v+r ++dp ++ +tY+g+H+++ GSBRNA2T00020650001 121 DDNHTWRKYGQKEILGSKFPRAYYRCTHQklyNCPAKKQVQRLNDDPFTFRVTYRGSHTCH 181 8**************************999*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.5E-27	117	181	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-25	119	182	IPR003657	WRKY domain
SMART	SM00774	9.1E-37	120	182	IPR003657	WRKY domain
Pfam	PF03106	9.2E-26	121	181	IPR003657	WRKY domain
PROSITE profile	PS50811	20.243	121	183	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
LDEITRTFGD ANERLKIVLE FRNSVVVSCS DQLLMQNEPG LMQEYWLRCG GSTSSQGTKA 60 MTQRQIMAVE DGRRNLTPAE RSGGSSSNPS TPRQRRRKNE GGEHVVLMAA LRTGNINLPP 120 DDNHTWRKYG QKEILGSKFP RAYYRCTHQK LYNCPAKKQV QRLNDDPFTF RVTYRGSHTC 180 HIYSTASAAA PTTPVTTSFS LDYGPPFFDM ADAMMFGSSG IGANMDIYPF NDPSHHDDHC 240 YRRSEDGDDG DK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	3e-20	121	180	9	68	OsWRKY45
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00020650001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022556084.1	0.0	WRKY transcription factor 55-like
Swissprot	Q9SHB5	1e-118	WRK55_ARATH; WRKY transcription factor 55
TrEMBL	A0A078JYS8	0.0	A0A078JYS8_BRANA; BnaCnng74680D protein (Fragment)
STRING	Bo4g190380.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3641	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	1e-113	WRKY DNA-binding protein 55

Publications ? help Back to Top
Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116]