PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00020945001
Common NameGSBRNA2T00020945001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 274aa    MW: 31177.6 Da    PI: 6.9404
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00020945001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.51.5e-051652001454
                          HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +++ +++  L +++P+      kK+s a++Le++ +YI  L
  GSBRNA2T00020945001 165 RKVSDRIRSLEKIMPWE-----KKMSLAATLEETHKYITFL 200
                          6899************9.....8***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.204151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-4166207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-6166208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MESCYEFDSL PELPPLPQAY APMEEYYPYD IAPLESLPPF PHSDFAPHGG LITFSDAHQE  60
YLQLQKQQQH CAEPMFTDSS LSLVTRDYLT ESTRFENLFS HDVPFLYLPD LKSVEDARSP  120
PPCLSLAPPP LPVARQRHVR SRVNNTFSIS SKSKAPACQN VQGTRKVSDR IRSLEKIMPW  180
EKKMSLAATL EETHKYITFL HSQIASLRWM PLDSVYPTKP REETTSLLNS LTRQQLLQVL  240
ANSPGSRNVL YKQGVCVFSY EQLLSLKMMA RNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00020945001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145434.10.0PREDICTED: transcription factor bHLH117
SwissprotQ9LRJ48e-72BH117_ARATH; Transcription factor bHLH117
TrEMBLA0A078J1Y20.0A0A078J1Y2_BRANA; BnaA05g36200D protein
STRINGBra031324.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.15e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]