PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00021175001
Common NameGSBRNA2T00021175001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 362aa    MW: 39936.7 Da    PI: 7.1032
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00021175001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-12298343655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L++l+P+     ++  + a++L +Av+YIk+Lq
  GSBRNA2T00021175001 298 SIAERVRRTKISERMRKLQDLVPNM----DTQTNTADMLDLAVQYIKDLQ 343
                          689*********************7....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.072292342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-16295358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.09E-12296347No hitNo description
Gene3DG3DSA:4.10.280.102.9E-15297354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-9298343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-13298348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MESEFQQHHF LLHDHQHQRP PRASGLVRYQ SAPSSYFSSF GESIEEFLDR PTSPETERIL  60
SGFLQTTDTS NNVDSFLHHT FSETENKPPE VKTEEETVVD DIPAMEVGEM APPVSTGYAS  120
VVRSLGQNKR PRDDRTPASN LARHNSSPAG LFSSIDVETA YAAVMKNMGG FGVMNMSNNS  180
TEASSLTPRS KLPPPSMGSI PEVDDVKPVF SSRLPPRTLS GGFNQGSASS KRMAIARTQS  240
GGLDQYKTKD EDSSASRRPP LAHHMSLPKS LSDIEQLLSD SIPCKIRAKR GCATHPRSIA  300
ERVRRTKISE RMRKLQDLVP NMDTQTNTAD MLDLAVQYIK DLQEQVKGLE DSRARCRCSC  360
A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.80030.0flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00021175001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147780.10.0PREDICTED: transcription factor bHLH122
SwissprotQ9C6900.0BH122_ARATH; Transcription factor bHLH122
TrEMBLA0A078GDV30.0A0A078GDV3_BRANA; BnaA06g02490D protein
STRINGBra018896.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105472632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.10.0bHLH family protein
Publications ? help Back to Top
  1. Yang Z, et al.
    Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.
    Mol. Cell Proteomics, 2013. 12(12): p. 3559-82
    [PMID:24043427]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Takahashi Y,Kinoshita T,Matsumoto M,Shimazaki K
    Inhibition of the Arabidopsis bHLH transcription factor by monomerization through abscisic acid-induced phosphorylation.
    Plant J., 2016. 87(6): p. 559-67
    [PMID:27227462]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Takahashi Y,Ebisu Y,Shimazaki KI
    Reconstitution of Abscisic Acid Signaling from the Receptor to DNA via bHLH Transcription Factors.
    Plant Physiol., 2017. 174(2): p. 815-822
    [PMID:28438792]